View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_low_5 (Length: 385)
Name: NF19513_low_5
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 4664600 - 4664957
Alignment:
| Q |
13 |
aatataacaaacttgtaaccaattaaacttattgtgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaat |
112 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
4664600 |
aatataacaaacttgtaaccaactaaacttattgtgattactaagtgatcttaatcaaacaaccttgattaaatcactaaacagatattctaacttgaat |
4664699 |
T |
|
| Q |
113 |
taacaaaactaacatacactcaattaattattggctaggaattgattgctgaaggagcagtggagcttttggtgccgggaaatttgcctgttggatgcag |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664700 |
taacaaaactaatatacactcaattaattattggctaggaattgattgctgaaggagcagtggagcttttggtgccgggaaatttgcctgttggatgcaa |
4664799 |
T |
|
| Q |
213 |
tgctgtgtacctaactttgtttagtagcaagaacatatcggactatgatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664800 |
tgctgtgtacctaactttgtttagtagcaagaacatatcagactatgatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatg |
4664899 |
T |
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| Q |
313 |
cagctcaattttgccttacagacactaaggacgaagaatcctcatgcaagaataatgt |
370 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4664900 |
cagctcaattttgccttacagacactaaggaccaagaatcctcatgcaagaataatgt |
4664957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 126 - 370
Target Start/End: Original strand, 4667881 - 4668125
Alignment:
| Q |
126 |
atacactcaattaattattggctaggaattgattgctgaaggagcagtggagcttttggtgccgggaaatttgcctgttggatgcagtgctgtgtaccta |
225 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
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| T |
4667881 |
atacactcaattaattattggctaggaattgatcgctgaaggagcagtggagcttttggtgccaggaaatttgcctgttggatgctctgttgtgtaccta |
4667980 |
T |
|
| Q |
226 |
actttgtttagtagcaagaacatatcggactatgatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatgcagctcaattttg |
325 |
Q |
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|||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |
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| T |
4667981 |
acttcgtttagcagcaagaacataaaggactatgatgaaaatggatgtttaaaatctttcaatgatttagcaaagaaccacaacatgcagctcaatattg |
4668080 |
T |
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| Q |
326 |
ccttacagacactaaggacgaagaatcctcatgcaagaataatgt |
370 |
Q |
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| T |
4668081 |
ccttacagacactaaggaagaagaatcctcatgcaagaataatgt |
4668125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 26454301 - 26454413
Alignment:
| Q |
13 |
aatataacaaacttgtaaccaattaaacttattgtgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaat |
112 |
Q |
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||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| |||| ||| ||||| || | |||||| ||||||||| |
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| T |
26454301 |
aatataacaaactagtaaccaactaaactaattgtgattactatgtgatcttaatcaaacagttttgactaagtcactgaacacttattcaaacttgaat |
26454400 |
T |
|
| Q |
113 |
taacaaaactaac |
125 |
Q |
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|| ||||||||| |
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| T |
26454401 |
tattaaaactaac |
26454413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 22581005 - 22580933
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaacaaa |
119 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
22581005 |
tgattactatgtgatcttaaccaaacaaccttgattaagtcactaatcacttattctaacttgaattaacaaa |
22580933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 7678854 - 7678926
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaacaaa |
119 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||| |||| || | ||||||||||||||||||||||| |
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| T |
7678854 |
tgattactatgtgatcttaaccaaacaaacttgattaagtcacaaatcacttattctaacttgaattaacaaa |
7678926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 3755762 - 3755834
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaacaaa |
119 |
Q |
| |
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||||||||| || ||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
3755762 |
tgattactatgtcatcttaaccaaacaaacttgattaagtcactaatcacttattctaacttgaattaacaaa |
3755834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 39106186 - 39106127
Alignment:
| Q |
16 |
ataacaaacttgtaaccaattaaa--cttattgtgattactaagtgatcttaatcaaaca |
73 |
Q |
| |
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||||||||||||||||||| |||| || ||| ||||||||| ||||||||||||||||| |
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| T |
39106186 |
ataacaaacttgtaaccaactaaaaactaattatgattactatgtgatcttaatcaaaca |
39106127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 2601873 - 2601929
Alignment:
| Q |
63 |
ttaatcaaacaaccttga-ttaaatcactaaatagttattctaacttgaattaacaa |
118 |
Q |
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|||||||||||| ||||| |||||||||||| | |||| ||||||||||||||||| |
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| T |
2601873 |
ttaatcaaacaaacttgaattaaatcactaatcaattatgctaacttgaattaacaa |
2601929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 11421844 - 11421916
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaacaaa |
119 |
Q |
| |
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||||||||| |||||||||| ||||||| | ||||||| ||||||| | || |||||||||||||||||||| |
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| T |
11421844 |
tgattactatgtgatcttaaccaaacaaacatgattaagtcactaatcacttgttctaacttgaattaacaaa |
11421916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 450559 - 450488
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaacaaa |
119 |
Q |
| |
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||||||||| |||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
450559 |
tgattactatgtgatcttaagcaaacaaa-ttgattaagtcactaatcacttattctaacttgaattaacaaa |
450488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 53976924 - 53976866
Alignment:
| Q |
57 |
gtgatcttaatcaaacaaccttgattaaatcactaaatagttattctaacttgaattaa |
115 |
Q |
| |
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|||||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||| |
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|
| T |
53976924 |
gtgatcttaaccaaacaaacttgattaagtcactaatcatttattctaacttgaattaa |
53976866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 9451000 - 9450929
Alignment:
| Q |
47 |
tgattactaagtgatcttaatcaaacaaccttga-ttaaatcactaaatagttattctaacttgaattaacaa |
118 |
Q |
| |
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||||||||| ||||| |||||||||||| ||||| |||||||||||| | |||| |||||||||| |||||| |
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| T |
9451000 |
tgattactatgtgat-ttaatcaaacaaacttgaattaaatcactaatcaattatgctaacttgaaataacaa |
9450929 |
T |
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