View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19513_low_7 (Length: 362)

Name: NF19513_low_7
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19513_low_7
NF19513_low_7
[»] chr3 (16 HSPs)
chr3 (16-347)||(23800923-23801254)
chr3 (22-103)||(23800729-23800810)
chr3 (38-142)||(43150512-43150615)
chr3 (62-142)||(13724047-13724127)
chr3 (24-142)||(26906486-26906603)
chr3 (24-142)||(36278778-36278895)
chr3 (24-133)||(10441280-10441388)
chr3 (24-142)||(25446281-25446399)
chr3 (81-142)||(4072352-4072413)
chr3 (33-142)||(8831772-8831881)
chr3 (33-142)||(22101196-22101305)
chr3 (62-137)||(44920706-44920780)
chr3 (71-142)||(46664208-46664278)
chr3 (62-142)||(5529923-5530003)
chr3 (24-142)||(36657455-36657572)
chr3 (24-142)||(45487831-45487948)
[»] chr4 (6 HSPs)
chr4 (21-98)||(1051191-1051268)
chr4 (22-142)||(4688267-4688387)
chr4 (24-142)||(20435162-20435279)
chr4 (33-142)||(24969572-24969683)
chr4 (71-138)||(27434646-27434712)
chr4 (24-142)||(42274514-42274632)
[»] chr1 (14 HSPs)
chr1 (33-142)||(9978082-9978191)
chr1 (33-142)||(2125101-2125209)
chr1 (22-142)||(3607749-3607868)
chr1 (33-142)||(15324658-15324767)
chr1 (81-142)||(21930412-21930473)
chr1 (24-142)||(2854554-2854671)
chr1 (24-142)||(23698524-23698641)
chr1 (81-142)||(27926329-27926391)
chr1 (81-134)||(18651329-18651381)
chr1 (81-142)||(27928376-27928437)
chr1 (81-142)||(47940649-47940710)
chr1 (39-142)||(48954251-48954353)
chr1 (38-86)||(10262467-10262515)
chr1 (24-142)||(50627163-50627280)
[»] chr8 (3 HSPs)
chr8 (22-129)||(8843394-8843503)
chr8 (62-142)||(10778689-10778768)
chr8 (24-142)||(38629506-38629623)
[»] chr7 (8 HSPs)
chr7 (33-132)||(32482245-32482343)
chr7 (71-142)||(10936539-10936609)
chr7 (24-142)||(30594725-30594842)
chr7 (24-142)||(35339300-35339417)
chr7 (24-142)||(38883253-38883370)
chr7 (24-142)||(20184260-20184378)
chr7 (62-142)||(34052311-34052390)
chr7 (81-142)||(39617920-39617981)
[»] chr5 (9 HSPs)
chr5 (33-142)||(1138591-1138699)
chr5 (33-142)||(21261975-21262083)
chr5 (39-105)||(2538464-2538530)
chr5 (24-142)||(20476463-20476580)
chr5 (63-142)||(4266014-4266092)
chr5 (81-142)||(24397324-24397385)
chr5 (24-142)||(15855875-15855992)
chr5 (24-142)||(16472987-16473104)
chr5 (24-142)||(35420634-35420751)
[»] chr2 (7 HSPs)
chr2 (33-142)||(3116908-3117016)
chr2 (81-142)||(20892916-20892977)
chr2 (81-142)||(1924059-1924120)
chr2 (39-142)||(9281384-9281486)
chr2 (81-142)||(23835908-23835969)
chr2 (33-101)||(8265958-8266026)
chr2 (81-142)||(9850837-9850896)
[»] chr6 (4 HSPs)
chr6 (39-138)||(885421-885519)
chr6 (22-142)||(4890500-4890620)
chr6 (24-142)||(11687165-11687282)
chr6 (24-142)||(21379963-21380080)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 23801254 - 23800923
Alignment:
Q  16 atttaattcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaatt 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23801254 atttcattcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaatt 23801155  T
Q  116 gtatttttagttaagaactatacgaaagcacgtgagagaatgcaatttacttctatctattaaaaattactaaaatcaataaggatgattatgagaacaa 215  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  23801154 gtatttttagttaagaactatacgaaaacacgtgagagaatgcaatttacttatgtctattaaaaattactaaaatcaataagaatgattatgagaacaa 23801055  T
Q  216 agtacaaacgtctagattaataacatacaacgataaaatgtatatgaatgtgataaattctataaatatgatgaaattaaaataattcatcacggacaaa 315  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||| ||||    
T  23801054 agtacaaacgtctaaattaataacatacaacgacaaaatgtatatgaatgtgataaattctataaatataccaaaattaaagtaattcatcacgggcaaa 23800955  T
Q  316 caaaaagtaataattttttggatgagattaat 347  Q
    |||||| |||||||||||||||||||||||||    
T  23800954 caaaaaataataattttttggatgagattaat 23800923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 23800810 - 23800729
Alignment:
Q  22 ttcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataa 103  Q
    |||||| ||| ||||||||||| | |||||||||||||| |||||| | |||||||||||||||| | ||| ||||||||||    
T  23800810 ttcttacatgcttttggtatgagttttaactaaactactcatgattgactcaaatttacaattttttcaaagtttgttataa 23800729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 43150615 - 43150512
Alignment:
Q  38 gtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactat 136  Q
    |||||||||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| ||||||||||||||| ||| ||    
T  43150615 gtatgattcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaaaaaccat 43150518  T
Q  137 acgaaa 142  Q
    ||||||    
T  43150517 acgaaa 43150512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 13724047 - 13724127
Alignment:
Q  62 atgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    ||||||| |||||||| | |||||||| ||| ||||||||| ||  |||||  ||||||||||||||| || |||||||||    
T  13724047 atgatttcttcaaattcataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaaaaattatacgaaa 13724127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 26906603 - 26906486
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||  |||| ||||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||    
T  26906603 cttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttt 26906506  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  26906505 tagttaagaaccatacgaaa 26906486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 36278778 - 36278895
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||  |||| ||||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||    
T  36278778 cttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttt 36278875  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  36278876 tagttaagaaccatacgaaa 36278895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 10441280 - 10441388
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    ||||| || |||||||||||||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||    
T  10441280 cttaggtgcttttggtatgattcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttt 10441377  T
Q  123 tagttaagaac 133  Q
    |||||||||||    
T  10441378 tagttaagaac 10441388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 25446399 - 25446281
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattttt 123  Q
    ||||| || |||| ||||| |||||||||||| |    |||||||  ||||||  | |||||||| ||| ||||||||| ||  |||||  |||||||||    
T  25446399 cttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtattttt 25446300  T
Q  124 agttaagaactatacgaaa 142  Q
    |||||||||| ||||||||    
T  25446299 agttaagaaccatacgaaa 25446281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 4072352 - 4072413
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  4072352 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 4072413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 8831881 - 8831772
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaa 132  Q
    |||| ||||| |||||||||||| |    ||||||| |||||||  | |||||||| ||| ||||||||| ||  |||||  ||||||||||||| ||||    
T  8831881 ttttcgtatggttcttaactaaattcaccatgatttcttcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagtttagaa 8831782  T
Q  133 ctatacgaaa 142  Q
    | ||||||||    
T  8831781 ccatacgaaa 8831772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 22101305 - 22101196
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaa 132  Q
    |||| ||||| |||||||||||| |   ||||||||  ||||||  | |||||||| ||| ||||||||| ||   ||||  ||||||||||||||||||    
T  22101305 ttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaacaaaatatgtatttttagttaagaa 22101206  T
Q  133 ctatacgaaa 142  Q
    | ||||||||    
T  22101205 ccatacgaaa 22101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 44920706 - 44920780
Alignment:
Q  62 atgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactata 137  Q
    |||||||  ||||||||| |||||||| ||| ||| ||||| ||  ||||||| |||||||||||||||||||||||    
T  44920706 atgattttctcaaatttataattttctcaaagtttattatatcc--aaaaaatatgtatttttagttaagaactata 44920780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 46664278 - 46664208
Alignment:
Q  71 tcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    ||||||| | |||||||| ||| |||||||||   | ||||||| ||||||||||||||||||||||||||||    
T  46664278 tcaaattcataattttctcaaagtttgttatat--taaaaaaatatgtatttttagttaagaactatacgaaa 46664208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 5530003 - 5529923
Alignment:
Q  62 atgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    ||||||| || |||| || |||||||| ||| |||| |||| ||  |||||  ||||||||||||||||||| ||||||||    
T  5530003 atgatttctttaaatctataattttctcaaagtttgatatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 5529923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 36657455 - 36657572
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| |   ||||||| ||||||||    
T  36657455 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatca--aaaaaatatgtatttt 36657552  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  36657553 tagttaagaaccatacgaaa 36657572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 45487948 - 45487831
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    ||||| || |||| ||||| |||||||||||| |    |||||||  ||||||| | |||||||| ||  ||||||||| ||  ||||||| ||||||||    
T  45487948 cttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttatatcc--aaaaaatatgtatttt 45487851  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  45487850 tagttaagaaccatacgaaa 45487831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 1051191 - 1051268
Alignment:
Q  21 attcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgt 98  Q
    ||||||| |||||||| |||| |||||||| |||| |  ||||||||| |||||||||| |||||||||||| |||||    
T  1051191 attcttacatgattttcgtataattcttaattaaatttattatgatttcttcaaatttataattttcttaaagtttgt 1051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 4688267 - 4688387
Alignment:
Q  22 ttcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattt 121  Q
    ||||||| || |||| ||||| |||||||||||| |   | ||||||  ||||||| |||||||||| ||| ||||||||| ||  |||||  |||||||    
T  4688267 ttcttaggtgcttttcgtatggttcttaactaaattcactgtgatttcctcaaattcacaattttctcaaagtttgttatatccaaaaaaatatgtattt 4688366  T
Q  122 ttagttaagaactatacgaaa 142  Q
    ||| |||||||| ||||||||    
T  4688367 ttaattaagaaccatacgaaa 4688387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 20435162 - 20435279
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| |||||||||||| |  | |||||||  ||||||  | ||||||||  || ||||||||| ||  ||||||| ||||||||    
T  20435162 cttagatgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcgaagtttgttatatcc--aaaaaatatgtatttt 20435259  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  20435260 tagttaagaaccatacgaaa 20435279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 24969572 - 24969683
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat--tgtatttttagttaag 130  Q
    |||| ||||| |||||||||||| |    |||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||   ||||||||||||||||    
T  24969572 ttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaaaaaatgtatttttagttaag 24969671  T
Q  131 aactatacgaaa 142  Q
    ||||||||||||    
T  24969672 aactatacgaaa 24969683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 27434712 - 27434646
Alignment:
Q  71 tcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatac 138  Q
    ||||||| | |||||||| ||| ||||||||| ||  ||||||| |||||||||||||||||||||||    
T  27434712 tcaaattcataattttctcaaagtttgttatatccaaaaaaaat-gtatttttagttaagaactatac 27434646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 42274514 - 42274632
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattttt 123  Q
    |||||||| |||| ||||| |||||||||||| |    |||||||  ||||||  | |||||||| ||| ||||||||| ||  |||||  | |||||||    
T  42274514 cttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatatattttt 42274613  T
Q  124 agttaagaactatacgaaa 142  Q
    |||||||||| ||||||||    
T  42274614 agttaagaaccatacgaaa 42274632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 9978082 - 9978191
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaa 132  Q
    |||| |||||||||||||||||| |   ||||||||  ||||||  | |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||    
T  9978082 ttttcgtatgattcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 9978181  T
Q  133 ctatacgaaa 142  Q
    | ||||||||    
T  9978182 ccatacgaaa 9978191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 2125101 - 2125209
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaaga 131  Q
    |||| ||||| |||||||||||| |    ||||||| || ||||||| |||||||| ||| ||||||||| |   ||||||| |||||||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgttatatca--aaaaaatatgtatttttagttaaga 2125198  T
Q  132 actatacgaaa 142  Q
    |||||||||||    
T  2125199 actatacgaaa 2125209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 3607749 - 3607868
Alignment:
Q  22 ttcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatt 120  Q
    ||||||| || |||| ||||| |||||||||||| |  | |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||    
T  3607749 ttcttaggtgctttttgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatt 3607846  T
Q  121 tttagttaagaactatacgaaa 142  Q
    ||||||||||||| ||||||||    
T  3607847 tttagttaagaaccatacgaaa 3607868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 15324767 - 15324658
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaa 132  Q
    |||| ||||| |||||||||||| |   ||||||||  ||||||  | |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||    
T  15324767 ttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaa 15324668  T
Q  133 ctatacgaaa 142  Q
    | ||||||||    
T  15324667 ccatacgaaa 15324658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 21930473 - 21930412
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||||||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  21930473 aattttcttaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 21930412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 2854554 - 2854671
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||  |||| ||||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||    
T  2854554 cttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttt 2854651  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  2854652 tagttaagaaccatacgaaa 2854671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 23698524 - 23698641
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||  |||| ||||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||    
T  23698524 cttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttt 23698621  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  23698622 tagttaagaaccatacgaaa 23698641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 27926329 - 27926391
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  ||||||| ||||||||||||||||||| ||||||||    
T  27926329 aattttctcaaagtttgttatatccaaaaaaaatatgtatttttagttaagaaccatacgaaa 27926391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 18651329 - 18651381
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaact 134  Q
    |||||||| |||||||||||||| || |||||| |||||||||| |||||||||    
T  18651329 aattttctcaaaatttgttataa-ctaaaaaaaatgtatttttatttaagaact 18651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 27928376 - 27928437
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  27928376 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 27928437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 47940649 - 47940710
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  47940649 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 47940710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 48954251 - 48954353
Alignment:
Q  39 tatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactata 137  Q
    |||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||||||||||||| |||    
T  48954251 tatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttttagttaagaaccata 48954348  T
Q  138 cgaaa 142  Q
    |||||    
T  48954349 cgaaa 48954353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 10262515 - 10262467
Alignment:
Q  38 gtatgattcttaactaaactacttatgatttattcaaatttacaatttt 86  Q
    ||||||||||||||| ||||||| ||||||| |||||||  ||||||||    
T  10262515 gtatgattcttaactcaactactcatgattttttcaaatccacaatttt 10262467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 50627280 - 50627163
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||| ||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||    
T  50627280 cttatatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttt 50627183  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  50627182 tagttaagaaccatacgaaa 50627163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 8843394 - 8843503
Alignment:
Q  22 ttcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataacc---ttaaaaaattgta 118  Q
    ||||||| || |||| |||||||| ||||||||||||||  |||||| |||||||| ||| ||||| ||||  |||||||||||     |||||||||||    
T  8843394 ttcttagttgtttttcgtatgatttttaactaaactactcgtgattttttcaaattcacatttttc-taaagcttgttataaccacacaaaaaaattgta 8843492  T
Q  119 tttttagttaa 129  Q
    |||||||||||    
T  8843493 tttttagttaa 8843503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 10778768 - 10778689
Alignment:
Q  62 atgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||  ||||||| ||||| |||| ||| ||||||||| ||  ||||||| |||||||||||||||||| ||||||||    
T  10778768 atgatttcctcaaattcacaatcttctcaaagtttgttatagccacaaaaaat-gtatttttagttaagaaccatacgaaa 10778689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 38629623 - 38629506
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    ||||| || |||| ||||| |||||||||||| |    |||||||  ||||||| | |||||||| ||| ||| ||||| ||  ||||||| ||||||||    
T  38629623 cttaggtgtttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttattatatcc--aaaaaatatgtatttt 38629526  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  38629525 tagttaagaaccatacgaaa 38629506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 32482245 - 32482343
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaa 132  Q
    |||| ||||||||| |||||||| |||| |||||||  ||||||  |||||||| |||||  ||||||||||   ||||||| |||||||||||||||||    
T  32482245 tttttgtatgattcctaactaaattactcatgattttctcaaatccacaatttttttaaaggttgttataacaacaaaaaat-gtatttttagttaagaa 32482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 10936539 - 10936609
Alignment:
Q  71 tcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    |||||| || |||||||| ||| ||||||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  10936539 tcaaatctataattttctcaaagtttgttataacc--aaaaaatatgtatttttagttaagaaccatacgaaa 10936609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 30594842 - 30594725
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| |||||||||||| |    |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||    
T  30594842 cttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttt 30594745  T
Q  123 tagttaagaactatacgaaa 142  Q
    |||||||||||||| |||||    
T  30594744 tagttaagaactatgcgaaa 30594725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 35339300 - 35339417
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    ||||| || |||| ||||| |||||||||||| |  | ||||||| |||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||    
T  35339300 cttaggtgcttttcgtatggttcttaactaaattcatcatgatttcttcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttt 35339397  T
Q  123 tagttaagaactatacgaaa 142  Q
    || |||||||| ||||||||    
T  35339398 tatttaagaaccatacgaaa 35339417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 38883370 - 38883253
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||    
T  38883370 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttt 38883273  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  38883272 tagttaagaaccatacgaaa 38883253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 20184260 - 20184378
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattttt 123  Q
    ||||| || |||| |||||||||||||||||| |    |||||||  ||||||  | |||||||| ||| ||||||||| ||  |||||  |||||||||    
T  20184260 cttaggtgcttttcgtatgattcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaaatatgtattttt 20184359  T
Q  124 agttaagaactatacgaaa 142  Q
    |||||||||  ||||||||    
T  20184360 agttaagaatcatacgaaa 20184378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 34052390 - 34052311
Alignment:
Q  62 atgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    |||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| ||||||||||||||||||| ||||||||    
T  34052390 atgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaagaaccatacgaaa 34052311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 39617920 - 39617981
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  | ||||||||||||||||||||||||||    
T  39617920 aattttctcaaagtttgttatatccaaaaaaatatttatttttagttaagaactatacgaaa 39617981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 1138699 - 1138591
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaaga 131  Q
    |||| ||||| |||||||||||| |  |||||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| |||||||||||||||||    
T  1138699 ttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaaga 1138602  T
Q  132 actatacgaaa 142  Q
    || ||||||||    
T  1138601 accatacgaaa 1138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 21262083 - 21261975
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaaga 131  Q
    |||| ||||| |||||||||||| |  | |||||||  ||||||  |||||||||| ||| ||||||||| ||  ||||||| |||||||||||||||||    
T  21262083 tttttgtatggttcttaactaaattcatcatgatttcctcaaatccacaattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaaga 21261986  T
Q  132 actatacgaaa 142  Q
    || ||||||||    
T  21261985 accatacgaaa 21261975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 2538530 - 2538464
Alignment:
Q  39 tatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataacc 105  Q
    |||||||||||||| |||||| |||||||| |||||||  | |||||||| | | ||||||||||||    
T  2538530 tatgattcttaacttaactacctatgattttttcaaatccataattttctcagagtttgttataacc 2538464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 20476580 - 20476463
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattttt 123  Q
    ||||| || |||| ||||| |||||||||||| |  | |||||||  ||||||  | |||||||| ||||||||||||| |   |||| || ||||||||    
T  20476580 cttaggtgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaaatttgttatatcacaaaaatat-gtattttt 20476482  T
Q  124 agttaagaactatacgaaa 142  Q
    |||||||||| ||||||||    
T  20476481 agttaagaaccatacgaaa 20476463  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 4266092 - 4266014
Alignment:
Q  63 tgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    |||||| |||||||  | |||||||||||| ||||||| | ||  ||||||| ||||||||||||||||||| ||||||||    
T  4266092 tgatttcttcaaatccataattttcttaaagtttgttacatcc--aaaaaatatgtatttttagttaagaaccatacgaaa 4266014  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 24397324 - 24397385
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  24397324 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 24397385  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 15855992 - 15855875
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| |   ||||||| ||||||||    
T  15855992 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatca--aaaaaatatgtatttt 15855895  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  15855894 tagttaagaaccatacgaaa 15855875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 16473104 - 16472987
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| |   ||||||| ||||||||    
T  16473104 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatca--aaaaaatatgtatttt 16473007  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  16473006 tagttaagaaccatacgaaa 16472987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 35420634 - 35420751
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| |   ||||||| ||||||||    
T  35420634 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatca--aaaaaatatgtatttt 35420731  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  35420732 tagttaagaaccatacgaaa 35420751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 3117016 - 3116908
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaaga 131  Q
    |||| ||||| |||||||||||| |  |||||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| |||||||||||||||||    
T  3117016 ttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaaga 3116919  T
Q  132 actatacgaaa 142  Q
    || ||||||||    
T  3116918 accatacgaaa 3116908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 20892977 - 20892916
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| || ||||||  ||||||||||||||||||| ||||||||    
T  20892977 aattttctcaaagtttgttatatccataaaaatatgtatttttagttaagaaccatacgaaa 20892916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 1924059 - 1924120
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  1924059 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 1924120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 9281384 - 9281486
Alignment:
Q  39 tatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactata 137  Q
    |||| |||||||||||| |   ||||||||  ||||||| | |||||||| ||| ||||||||| ||  ||||||| | ||||||||||||||||| |||    
T  9281384 tatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttatatcc--aaaaaatatatatttttagttaagaaccata 9281481  T
Q  138 cgaaa 142  Q
    |||||    
T  9281482 cgaaa 9281486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23835969 - 23835908
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaattgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||| ||||||||| ||  |||||  ||||||||||||||||||| ||||||||    
T  23835969 aattttctcaaagtttgttatatccaaaaaaatatgtatttttagttaagaaccatacgaaa 23835908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 8266026 - 8265958
Alignment:
Q  33 ttttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttat 101  Q
    |||| ||||||||||||||| |||||| ||  |||| || ||||||| |||||||| ||| ||||||||    
T  8266026 ttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgttat 8265958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 9850837 - 9850896
Alignment:
Q  81 aattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactatacgaaa 142  Q
    |||||||| ||||||||||||| |   ||||||| ||||||||||||||||||| ||||||||    
T  9850837 aattttctcaaaatttgttatatc---aaaaaatatgtatttttagttaagaaccatacgaaa 9850896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 885519 - 885421
Alignment:
Q  39 tatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttttagttaagaactata 137  Q
    ||||||||||||||||| |  | |||||||  ||||||  | |||||||| ||| ||||||||| ||  ||||||| ||||||||||||||||||| |||    
T  885519 tatgattcttaactaaattcatcatgattttctcaaatccataattttctcaaagtttgttatatcc--aaaaaatatgtatttttagttaagaaccata 885422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 4890500 - 4890620
Alignment:
Q  22 ttcttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaattgtattt 121  Q
    ||||||| || |||| ||||| |||||||||||| |    |||||||  ||||||| | |||||||| ||| ||||||||| ||  |||||  ||  |||    
T  4890500 ttcttaggtgtttttcgtatggttcttaactaaatttaccatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaaatatgcgttt 4890599  T
Q  122 ttagttaagaactatacgaaa 142  Q
    |||||||||||| ||||||||    
T  4890600 ttagttaagaaccatacgaaa 4890620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 11687165 - 11687282
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    |||||||| |||| ||||| ||||||||||||    | |||||||  ||||||  | |||||||| ||| ||||||||| |   ||||||| ||||||||    
T  11687165 cttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttatatca--aaaaaatatgtatttt 11687262  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  11687263 tagttaagaaccatacgaaa 11687282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 21379963 - 21380080
Alignment:
Q  24 cttagatgattttggtatgattcttaactaaactacttatgatttattcaaatttacaattttcttaaaatttgttataaccttaaaaaat-tgtatttt 122  Q
    ||||| || |||| ||||| |||||||||||| |    |||||||  ||||||| | |||||||| ||  ||||||||| ||  ||||||| ||||||||    
T  21379963 cttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttatatcc--aaaaaatatgtatttt 21380060  T
Q  123 tagttaagaactatacgaaa 142  Q
    ||||||||||| ||||||||    
T  21380061 tagttaagaaccatacgaaa 21380080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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