View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19514_high_1 (Length: 767)

Name: NF19514_high_1
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19514_high_1
NF19514_high_1
[»] chr3 (1 HSPs)
chr3 (1-750)||(34540676-34541425)


Alignment Details
Target: chr3 (Bit Score: 695; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 1 - 750
Target Start/End: Original strand, 34540676 - 34541425
Alignment:
Q  1 catatatgttcattgaatatattagtcaagcaaagatatgacaacttaggagaactaagactgcaacataatacattgtcaatgaaataaaatcaacact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34540676 catatatgttcattgaatatattagtcaagcaaagatatgacaacttaggagaactaagactgcaacataatacattgtcaatgaaataaaatcaacact 34540775  T
Q  101 aatcagtatcacctgaaagacatgtacaacaggcttgacttgccagaacaaaagaacgttatcattctgcatcccttcacctatacaaaaaagaaaagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34540776 aatcagtatcacctgaaagacatgtacaacaggcttgacttgccagaacaaaagaacgttatcattctgcatcccttcacctatacaaaaaagaaaagta 34540875  T
Q  201 actagcatcagaatgcagcaatggatcaatctatatgtgtctagggaatgtatttatgttattcttgcattttgaacactacctatcttccattttgaca 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||    
T  34540876 actagcatcagaatgcggcaatggatcaatctatatgtgtctagggaatgcaattatgttattcttgtattttgaacactacctatcttccattttgaca 34540975  T
Q  301 tactaattgctaaatcactcaattcaactcatataactcggccattgtttggttacgcaacaggatttccacatttagtcaaaatcacgc-aaaaattct 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34540976 tactaattgctaaatcgctcaattcaactcatataactcggccattgtttggttacgcaacaggatttccacatttagtcaaaatcacgcaaaaaattct 34541075  T
Q  400 catttaaagtgaaactacagttactagcttctcgatttcacgacaaaagggcatctagacgtgcggcagccatgagcaaacgtaaaatcaaacacaccat 499  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||    
T  34541076 catttaaagtgaaactacaattactagcttctcgatttcacgacaaaagggtgtctagacgtgcggcagccatgagcaaacgtaaaatcaaacaca-cat 34541174  T
Q  500 aagacagtcttaatggaatttgagattggcgaaaataaaaatgatactttaaaaatcaaatcattgagttccatatcttgccactccataatgatagcaa 599  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541175 aagacagtcttaatggaattttagattggcgaaaataaaaatgatactttaaaaatcaaatcattgagttccatatcttgccactccataatgatagcaa 34541274  T
Q  600 taaaatcaacagttaaccaccatagagacaattgaaaataaacaaacaaaagatagagacctgtatcacaaacgcaaattctttgcacattatctgcaag 699  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541275 taaaatcaacagttaaccaccatagagacaattgaaaataaataaacaaaagatagagacctgtatcacaaacgcaaattctttgcacattatctgcaag 34541374  T
Q  700 aaagggttcgtcaaggggaacaggaatcggtccaccattatagctcaaact 750  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34541375 aaagggttcgtcaaggggaacaggaatcggtccaccattatagctcaaact 34541425  T

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