View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_11 (Length: 343)
Name: NF19514_high_11
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 10881025 - 10880689
Alignment:
| Q |
8 |
ccaagaatatctttgtccagccagtcatctaatttgccatttctcaaagcaaatacatttttctccttgtgtgctatagacaaagcggcatcttgagcca |
107 |
Q |
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| T |
10881025 |
ccaagtatatctttgtccggccagtcatctaatttgccatttctcaaagcaaatacatttttctccttgtgtgctatagacaaagcggcatcttgagcca |
10880926 |
T |
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| Q |
108 |
tatcatgcatattgaaatgatcattggaactaccatccaacatcaaactcgagtcttttagcttttgaattgatgtatatactctatcacgggcttctct |
207 |
Q |
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| T |
10880925 |
tatcatgcatattgaaatgatcactggaactaccatccgacatcaaactcgagtcttttagcttttgaattgatgtatatactctatcacgggcttctct |
10880826 |
T |
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| Q |
208 |
tagcgtatagaccccttcaagtatacccaatccaaagcaatacttcaccaagtccataattaattgttgatgacccatttgagca-aaagtaagaaaatg |
306 |
Q |
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| T |
10880825 |
tagcgtatagaccccttcaagtatacccaatccaaagcaatacttcaccaagtccataattaattgttgatgacccatttgagcacaaagtaagaaaatg |
10880726 |
T |
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| Q |
307 |
gaccggagctcctcactttctagatgatcataactca |
343 |
Q |
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| T |
10880725 |
gaccggagctcctcactttctagatgatcataactca |
10880689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 10849587 - 10849257
Alignment:
| Q |
14 |
atatctttgtccagccagtcatctaatttgccatttctcaaagcaaatacatttttctccttgtgtgctatagacaaagcggcatcttgagccatatcat |
113 |
Q |
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| T |
10849587 |
atatccttgtccggccagtcatctaatttgccatttctcaaagcaaatacatttttctccttgtgtgctatagacaaagcggcatcttgaaccatatcat |
10849488 |
T |
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| Q |
114 |
gcatattgaaatgatcattggaactaccatccaacatcaaactcgagtcttttagcttttgaattgatgtatatactctatcacgggcttctcttagcgt |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10849487 |
gcatattgaaatgatcattggaactacaatccaacatcaaactcgagtcttttagcttttgaattgatgcatatactctatcacgggcttctcttagcgt |
10849388 |
T |
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| Q |
214 |
atagaccccttcaagtatacccaatccaaagcaatacttcaccaagtccataattaattgttgatgacccatttgagca-aaagtaagaaaatggaccgg |
312 |
Q |
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| T |
10849387 |
atagaccccttcaagtatacccaatccaaagcaatacttcaccaagtccataattaattgttgatgacccatttgagcacaaagtaagaaaatggaccgg |
10849288 |
T |
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| Q |
313 |
agctcctcactttctagatgatcataactca |
343 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10849287 |
agctcctcactttctagatgatcataactca |
10849257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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