View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19514_high_14 (Length: 315)
Name: NF19514_high_14
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 29953684 - 29953392
Alignment:
| Q |
18 |
ttagaagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29953684 |
ttagaagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaat |
29953585 |
T |
|
| Q |
118 |
gaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29953584 |
gaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtt |
29953485 |
T |
|
| Q |
218 |
tgttcatgctctgttaaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatccctatacagagtgttaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29953484 |
tgttcatgctctgttaaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatccctatacaaagtgttaa |
29953392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 29944747 - 29944505
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| || || ||||||| || |||||||||||| || |||||||||||||||||||||| | |
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| T |
29944747 |
aagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagtaaaatagctttgatgttagttcgatcaatgaca |
29944648 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgtt |
221 |
Q |
| |
|
||||||| |||| | | |||||||| |||||||| |||| || ||||||||||| |||||||||||||| ||| |||||||| |||||||||||||| |
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|
| T |
29944647 |
tgattttgttcactcccatgatcaatgttttggtgcttaaaagtgagaagtatgtctacaaagtcttcatgacgagttttgtctgtattagtggtttgtt |
29944548 |
T |
|
| Q |
222 |
catgctctgttaaaataacttccaacacctcatcaattgcttt |
264 |
Q |
| |
|
||||||||| || || | |||||||||||||||| |||||| |
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|
| T |
29944547 |
catgctctgatattatcatctccaacacctcatcaagtgcttt |
29944505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 29946708 - 29946444
Alignment:
| Q |
32 |
aaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaatgattttctt |
131 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| | | ||||||||| || ||||| ||||| | ||||||||| | ||| || | || |
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|
| T |
29946708 |
aaagcccattcaatcgcggtagcagatgtttcaattgctgccataaccgtgtctagtaatat-gccttaatgtttggtcgatcaataacatgtttctgtt |
29946610 |
T |
|
| Q |
132 |
cattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgttcatgctctgt |
231 |
Q |
| |
|
|||| | | |||| |||||||||| | ||| || || |||||||| || ||||||||||| || |||||||||||||||| ||||||||||||||||| |
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|
| T |
29946609 |
cattcttttgatctatggtttggttcttaattgagagtagtatgtctacgaagtcttcatgatgagttttgtctacattagttgtttgttcatgctctgt |
29946510 |
T |
|
| Q |
232 |
taaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatcccta |
297 |
Q |
| |
|
|| || ||||||| ||||||||||| || ||||| |||| |||||| ||||||||||||||||| |
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|
| T |
29946509 |
tattatcacttccagcacctcatcaagtgatttacttgttttcttgcaggctcgtgttaatcccta |
29946444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 29995439 - 29995195
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||| |
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|
| T |
29995439 |
aagttcagataaagcccattcaatcgaggtagcagatgtatcgattgctgccactatcatgtcgagcaaaatagccttgatgttagttcgatcaatgacg |
29995340 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgtt |
221 |
Q |
| |
|
|||||| |||| || | |||||||||||||||||||| || |||||||||||| ||||| |||| ||| || |||||| |||||||| | ||||| |
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|
| T |
29995339 |
agattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttatgatgagttttgtttacattagcagcttgtt |
29995240 |
T |
|
| Q |
222 |
catgctctgttaaaataacttccaacacctcatcaattgctttac |
266 |
Q |
| |
|
|||| |||||||| || || || | | ||||||||||||||||| |
|
|
| T |
29995239 |
catgttctgttaatatcacctctagctgctcatcaattgctttac |
29995195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 29964948 - 29964673
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| | |||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||| | | |
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|
| T |
29964948 |
aagttcagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagtaaaattgccttgatgttagttctgtcaataaca |
29964849 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgtt |
221 |
Q |
| |
|
| ||| |||||||||| |||| | |||||||||| || || |||||||| |||| || |||||||| ||| |||||||||||||||| |||||| |
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|
| T |
29964848 |
ccactttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgtt |
29964749 |
T |
|
| Q |
222 |
catgctctgttaaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatcccta |
297 |
Q |
| |
|
|||||||||| | || | ||||| |||||||||| ||||||||| |||| |||||| | |||||| |||||||| |
|
|
| T |
29964748 |
catgctctgtaattatcatctccaatacctcatcaagtgctttaccggttttcttgcaggttcgtgtaaatcccta |
29964673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 30009850 - 30010125
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||| | |||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
30009850 |
aagttcagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagtaaaattgccttgatgttagttctgtcaataaca |
30009949 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgtt |
221 |
Q |
| |
|
| ||| |||||||||| |||| | |||||||||| || || |||||||| |||| || |||||||| ||| |||||||||||||||| |||||| |
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|
| T |
30009950 |
ccactttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgtt |
30010049 |
T |
|
| Q |
222 |
catgctctgttaaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatcccta |
297 |
Q |
| |
|
|||||||||| | || | ||||| |||||||||| ||||||||| |||| |||||| | |||||| |||||||| |
|
|
| T |
30010050 |
catgctctgtaattatcatctccaatacctcatcaagtgctttaccggttttcttgcaggttcgtgtaaatcccta |
30010125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 30043770 - 30044011
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||| |
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|
| T |
30043770 |
aagttcagataaagcccattcaatcgaggtagcagatgtatcaattgctgccactatcatgtcgagcaaaatagccttgatgttagttcgatcaatgacg |
30043869 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgtt |
221 |
Q |
| |
|
|||||| |||| || | |||||||||||||||||||| || |||||||||||| ||||| |||| | || |||||| |||||||| | ||||| |
|
|
| T |
30043870 |
agattttgttcaccctcaatatcaatggtttggtgcataattgaaagaagtatgtctacaaaatcttttt---gagttttgtttacattagcagcttgtt |
30043966 |
T |
|
| Q |
222 |
catgctctgttaaaataacttccaacacctcatcaattgctttac |
266 |
Q |
| |
|
|||| |||||||| || || || | ||||||||||| |||||||| |
|
|
| T |
30043967 |
catgttctgttaatatcacctctagcacctcatcaagtgctttac |
30044011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 30007232 - 30006953
Alignment:
| Q |
18 |
ttagaagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaat |
117 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||| || || |||| | ||| ||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
30007232 |
ttagaagttcagataaagcccactcaatcgtggtagcagatgtatgaactgatgccgctatcatgtcgagcaaaatagccttgatgttagttcgatcaat |
30007133 |
T |
|
| Q |
118 |
gaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtt |
217 |
Q |
| |
|
|| |||||| |||| || | |||||||||||||||||||| || |||||||||||| ||||||||||||| ||| ||||||| |||||| || |
|
|
| T |
30007132 |
gacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaagtcttcattacgagttttgtcagtattagtagtc |
30007033 |
T |
|
| Q |
218 |
tgttcatgctctgttaaaataacttccaacacctcatcaattgctttacccgtttccttgcatgctcgtgttaatcccta |
297 |
Q |
| |
|
||||| |||||||||| || | ||||| |||||||| | ||||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
30007032 |
tgttcgtgctctgttattatcatctccaaaacctcatcgagggctttactggtttttttgcaagctcgtgttaatcccta |
30006953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30068294 - 30068478
Alignment:
| Q |
29 |
gataaagcccattcaa-tcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaatgattt |
127 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||||||| ||| ||| || ||||| || |||||||||| ||||||||| | ||||| |
|
|
| T |
30068294 |
gataaagcccattaaaatcgaggtagcagatgtatcaattgctgccactatcatgtcgagcaaaatagctttgatgttagatcgatcaattacgagattt |
30068393 |
T |
|
| Q |
128 |
tcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattag |
212 |
Q |
| |
|
| |||| || | |||||||||||| ||||||| || |||||||||||| || || |||| ||| || |||||| |||||||| |
|
|
| T |
30068394 |
tgttcaccctcgacatcaatggtttgatgcataattgaaagaagtatgtctacgaaatctttatgatgagttttgtttacattag |
30068478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 30001112 - 30000946
Alignment:
| Q |
22 |
aagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttgatgttagttcgatcaatgaaa |
121 |
Q |
| |
|
|||||| ||||||||||| || |||||| | | |||||||||||||| |||| | ||| ||| || ||||| ||||||||| | ||||||||||||| |
|
|
| T |
30001112 |
aagttcagataaagcccactctatcacgtttgaagatgtatcaattgatgcccctatcatgtcgagcaaaatagccttgatgatcgttcgatcaatgacg |
30001013 |
T |
|
| Q |
122 |
tgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtctt |
188 |
Q |
| |
|
||| || | || || | |||||||||||||||||||| || ||||| | |||| ||||| |||| |
|
|
| T |
30001012 |
agatcttgtccaccctcaacatcaatggtttggtgcataattgaaagaactgtgtctacaaaatctt |
30000946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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