View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_17 (Length: 308)
Name: NF19514_high_17
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 54864571 - 54864298
Alignment:
| Q |
16 |
atgcataatttgtctcaggagcttgcatgaaaagaggacaatagtacctctaatcttcttctcgtaaaatattcccttggaaaatatcccaaattaaagt |
115 |
Q |
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| T |
54864571 |
atgcataatttgtctcaggagcttgcatgaaaagaggacaatagtacctctaatcttcttctcgtaaaatattcccttggaaaatatcccaaattaaagt |
54864472 |
T |
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| Q |
116 |
cttgattttgaaaagacccttctaatcaaagaaattcaagtagttttgatcaagaaataaccaccaaaatagttaagcaagttgggataattaaccacat |
215 |
Q |
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| T |
54864471 |
cttgattatgaaaagacccttctaatcaaagaatttcaagtagttttgatcaagaaataaccaccaaaatagttaagcaagttgggataattaaccacat |
54864372 |
T |
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| Q |
216 |
taagtttttcagtacacaaaatcttctatgtatgttctgtac---ttctgttctactacttgagtggccggccactg |
289 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54864371 |
taagtttttcagtacacaaaa---tctatgtatgttctgtactaattctgttctactacttgagtggccggccactg |
54864298 |
T |
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