View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_27 (Length: 254)
Name: NF19514_high_27
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 45909829 - 45910057
Alignment:
| Q |
7 |
tcgaagaatatctataattatataaggacttctttgttcgtaagatgcaaacttacaatttatgtaaaatttatttgtttacccaagagacttgtaattt |
106 |
Q |
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| T |
45909829 |
tcgacgaatatctataattatataaggacttctttgttcgtaagatgcaaacttacaatttatgtaaaatttatttgtttacccaagagacttgtaattt |
45909928 |
T |
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| Q |
107 |
atccaataatgacaagttaagaccagaattctcggaaggtgaaacagagaaggaaacgaaaaacaaaccaattataaatctcttgctttaagagtttgcg |
206 |
Q |
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| T |
45909929 |
atccaataatgacaagttaagaccagaattcacggaaggtgaaacagagaaggaaacgaaaaacaaaccaattataaatctcttgctttaagagtttgcg |
45910028 |
T |
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| Q |
207 |
ttgagcaatctacgaaatcaacttctgct |
235 |
Q |
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| T |
45910029 |
ttgagcaatctacgaaatcaacttctgct |
45910057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 20993581 - 20993649
Alignment:
| Q |
166 |
aaaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgc |
234 |
Q |
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| T |
20993581 |
aaaacaaaccaattataaatgtcttggtctaacaggttttcttgtgcaatctacgaagtcaacttctgc |
20993649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 20272818 - 20272859
Alignment:
| Q |
152 |
agagaaggaaacgaaaaacaaaccaattataaatctcttgct |
193 |
Q |
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| T |
20272818 |
agagaaggaaacaaaaaacaaaccaattataaatcttttgct |
20272859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 3981738 - 3981700
Alignment:
| Q |
147 |
gaaacagagaaggaaacgaaaaacaaaccaattataaat |
185 |
Q |
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| T |
3981738 |
gaaacatagaaggaaacaaaaaacaaaccaattataaat |
3981700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 7975578 - 7975626
Alignment:
| Q |
68 |
atgtaaaatttatttgtttacccaagagacttgtaatttatccaataat |
116 |
Q |
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| T |
7975578 |
atgtaaaatttatttctttatccaagagactcgtaatttatccactaat |
7975626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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