View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_3 (Length: 590)
Name: NF19514_high_3
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Complemental strand, 45656698 - 45656139
Alignment:
| Q |
9 |
gaagaatatgatacaattagagtataggatacaccttcatatagtgatctaagtagctaagataactgtctatttatactgccttaaaccaattctaaca |
108 |
Q |
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| T |
45656698 |
gaagaatatgatacaattagagtataggatacaccttcatatagtgatctaagtagctaagataactgtctatttatactgccttaaaccaattctaaca |
45656599 |
T |
|
| Q |
109 |
aatctccaactactaactatatataacaaactatccctgaaattttcacacccattagggtataggataacacagactgtcaatcaatcatgtaacattt |
208 |
Q |
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| T |
45656598 |
aatctccaactactaactatatataacaaactatcactgaaattttcacacccattaggggataggataacacagactgtcaatca----tgtaacattt |
45656503 |
T |
|
| Q |
209 |
tgattttacttggcatctacaggaagggaccttaatttgatgtgtttatttgtttattctttgaatgctgcataggagtttgacggccgcataataaata |
308 |
Q |
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| T |
45656502 |
tgattttacttggcatctacaggaagggaccttaatttgatgtgtttatttgtttattctttgaatgctgcgtaggagtttgacggccgcataataaata |
45656403 |
T |
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| Q |
309 |
tcaaatatgctaagcctaaaaaggagaaaataccgccaccagtggaacggaaaccaataacatataacttgtttgtcgcaaactttccttatgaagcaag |
408 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45656402 |
tccaatatgctaagcctaaaaaggagaaaataccgccaccagtggaacggaaaccaataacatataacttgtttgttgcaaactttccttatgaagcaag |
45656303 |
T |
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| Q |
409 |
gtctaaagacgtcaaggagttttttgattcaggaactggtaaagttgtttctgcagaggttatatttcatgagaatcctagacgaccatctggttatgga |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45656302 |
gtctaaagacgtcaaggagttttttgattcaggaactggtaaagttgtttctgcagaggttatatttcatgagaatcctcgacgaccatctggttatgga |
45656203 |
T |
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| Q |
509 |
tttgtctcctacaagtctaagaaagaagctgatgaagctcttgccgagtttcaaggaaaggtaa |
572 |
Q |
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| T |
45656202 |
tttgtctcctacaagtctaagaaagaagctgatgaagctcttgccgagtttcaaggaaaggtaa |
45656139 |
T |
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