View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_30 (Length: 246)
Name: NF19514_high_30
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10880685 - 10880456
Alignment:
| Q |
1 |
tcacataaatctccatagatttctgcactccactcagttcctcttttttaagtttttcaagtgtggcatcccacattgactcactcttttttcttaatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10880685 |
tcacataaatctccatagatttctgcactccactcagttcctcttttttaagtttttcaagtgtggcttcccacattgactcactcttttttcttaatgc |
10880586 |
T |
|
| Q |
101 |
ccttccaacagtaacaattgccatgggtatccctgcacaatacttaacaatatcctgtttaaaattggacatttcatcatgtattccagcctcctcctta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10880585 |
ccttccaacagtaacaattgccatgggtatccctgcacaatacttaacaatatcctgtttaaaattgaacatttcatcatgtattccagcctcctcctta |
10880486 |
T |
|
| Q |
201 |
aacaacattagagattctgcatcatttaat |
230 |
Q |
| |
|
||||||||||||||||||||| | |||||| |
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| T |
10880485 |
aacaacattagagattctgcaccgtttaat |
10880456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10849253 - 10849034
Alignment:
| Q |
1 |
tcacataaatctccatagatttctgcactccactcagttcctcttttttaagtttttcaagtgtggcatcccacattgactcactcttttttcttaatgc |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||| |
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| T |
10849253 |
tcacagaaatctccatagatttctgcactccactcagttcctcttttttaagtttttcaagtgtggcttcccacactgactcgctcttatttcttaatgc |
10849154 |
T |
|
| Q |
101 |
ccttccaacagtaacaattgccatgggtatccctgcacaata---cttaacaatatcctgtttaaaattggacatttcatcatgtattccagcctcctcc |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
10849153 |
ccttgcaacagtaacaattgccatgggtatccctgcacaatacttcttaacaatctcctgtttaaatgtggacatttcagcatgtattccagcctcctcc |
10849054 |
T |
|
| Q |
198 |
ttaaacaacattagagattc |
217 |
Q |
| |
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|||||||||||||||||||| |
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| T |
10849053 |
ttaaacaacattagagattc |
10849034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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