View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_high_9 (Length: 386)
Name: NF19514_high_9
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 36953280 - 36952919
Alignment:
| Q |
13 |
aatattccaattaatacactcctaaagataaatttttcccaagtaatta----taccaaactgaatttgattgtgggaaaatgcacaagctacaaaccta |
108 |
Q |
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| T |
36953280 |
aatattccaattaatacactcctaaagataa-tttttcccaagtaattaattataccaaactgaatttgattgtgggaaaatgcacaagctacaaaccta |
36953182 |
T |
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| Q |
109 |
caactgatcaagtagtgatgttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatacttctagcaagcatttcttgatac |
208 |
Q |
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| T |
36953181 |
caactgatcaagtagtgaagttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaatgcttctagcaagcatttcttgatac |
36953082 |
T |
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| Q |
209 |
ttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaatattctcattaacaatctctttct |
308 |
Q |
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| T |
36953081 |
ttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaatattctcattaacaatctctttct |
36952982 |
T |
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| Q |
309 |
cttttgtaccctcttgaatcttcttctcctcaagccactgtaaatatcctgcaagatgtgagt |
371 |
Q |
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| T |
36952981 |
cttttgtaccctcttgaatcttcttctcctcaagccactgtaaatatcctgcaagatgtgagt |
36952919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 22870048 - 22870136
Alignment:
| Q |
196 |
catttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaa |
284 |
Q |
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| T |
22870048 |
catttcctgataccttctataagattcctccttttcaaccttaaacttctcatgacaatttgcaatgaacatttctgccaacatatcaa |
22870136 |
T |
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