View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_12 (Length: 338)
Name: NF19514_low_12
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 97 - 324
Target Start/End: Original strand, 32032765 - 32032992
Alignment:
| Q |
97 |
gaggcgcatagtgtacatgagttggcattatataaaaggacaagttatacttcacacaattttactgaccaaactgctcaattttccatttccttttgca |
196 |
Q |
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| T |
32032765 |
gaggcgcatagtgtacatgagttggcattatataaaaggacaagttatacttcacacaattttactgaccaaactgctcaattttccatttccttttgca |
32032864 |
T |
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| Q |
197 |
tgtatcctctgcctttaatttggctatatctttattttcatcccaatttcatatttgtttaatgagctcactactacacttattgcctcaatcaggaatc |
296 |
Q |
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| T |
32032865 |
tgtatcctctacctttaatttggctatatctttattttcatcccaatttcatatttgtttaatgagctcactactacacttattgcctcaatcaggaatc |
32032964 |
T |
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| Q |
297 |
aaatggctttgattctggtgttaattat |
324 |
Q |
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| T |
32032965 |
aaatggctttgattctggtgttaattat |
32032992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32032640 - 32032693
Alignment:
| Q |
1 |
ttgtgcacatgatatccaaagaaaaaatcaattccattttcacttaattacctt |
54 |
Q |
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| T |
32032640 |
ttgtgcacatgatatccaaagaaaaaaccaattccattttcacttaattacctt |
32032693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 32032716 - 32032747
Alignment:
| Q |
48 |
ttaccttgcacatcccacacagtatacatgag |
79 |
Q |
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| T |
32032716 |
ttaccttgcacatcccacacagtatacatgag |
32032747 |
T |
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