View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19514_low_13 (Length: 320)
Name: NF19514_low_13
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_13 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5401 - 5703
Alignment:
| Q |
1 |
atgaaaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5401 |
atgaaaattttgtctattcttgtttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaa |
5500 |
T |
|
| Q |
101 |
caaacaggtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacg |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
5501 |
caaacaggtgtgtgataatgatttagttgtgaaaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttg-aacg |
5594 |
T |
|
| Q |
200 |
agtacttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacgg |
298 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
5595 |
agtactttgcacaaaatttatctcatttagttcttctcataaacatgtttactcttgaaccatgtagtacttagcctaaatgtgaggtagcttcaaactg |
5694 |
T |
|
| Q |
299 |
ttatactat |
307 |
Q |
| |
|
||||||||| |
|
|
| T |
5695 |
ttatactat |
5703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 22095846 - 22096137
Alignment:
| Q |
8 |
ttttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaacag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22095846 |
ttttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgagcattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaaacag |
22095945 |
T |
|
| Q |
108 |
gtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgagtactt |
206 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
22095946 |
gtatgtgataatgatttagttgtgaaaaaagcgcaaagccaaggtatttgtttcctgtttttctaggtcttt-----actagaatttg-aactagtactt |
22096039 |
T |
|
| Q |
207 |
agcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacggttata |
303 |
Q |
| |
|
|||| ||| |||||||| || |||| |||||||||| ||| ||| |||||| |||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
22096040 |
tgcacaaaaagtatctcatctaattctcgtcataaacatgattattctggaaccacttagtacttagcctaaaagtgaggtagcttcaaactgttata |
22096137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 23383385 - 23383683
Alignment:
| Q |
2 |
tgaaaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
23383385 |
tgaaaattttgtctattcttgcttttgtttctcaaagaagaaaattgcttatgaacattaatatttgatgtgctcggaagagccaaaagattgagcaaac |
23383484 |
T |
|
| Q |
102 |
aaacaggtgtgtgataatgatttaattgtg-aaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacg |
199 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||| ||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
23383485 |
aaacaggtgtgtgataatggtttagttgtgaaaaaaatcgcaatgacaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaact |
23383579 |
T |
|
| Q |
200 |
agtacttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacgg |
298 |
Q |
| |
|
||||||| |||| |||| |||||||| || |||| |||||||||| ||| ||| |||||| |||||||| ||| ||| ||||||||||||||||| | |
|
|
| T |
23383580 |
agtactttgcacaaaatgtatctcatctaattctcttcataaacatgattattctggaaccacttagtacttagccaaaaagtgaggtagcttcaaactg |
23383679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 29225323 - 29225607
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29225323 |
aaattttgtttaatcttgcttttgtttcttgaa-aagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaaa |
29225421 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgagta |
203 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
29225422 |
caggtgtgtgataatgatttagttgtg-aaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaactagta |
29225515 |
T |
|
| Q |
204 |
cttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
||| |||| |||| |||||||| || |||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||||||||||||| |
|
|
| T |
29225516 |
ctttgcacaaaatgtatctcatctaattctcttcataaacatgattactcttgaaccacttagtacttagccaaaaagtgaggtagcttcaa |
29225607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 29338622 - 29338906
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29338622 |
aaattttgtttaatcttgcttttgtttcttgaa-aagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaaa |
29338720 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgagta |
203 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
29338721 |
caggtgtgtgataatgatttagttgtg-aaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaactagta |
29338814 |
T |
|
| Q |
204 |
cttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
||| |||| |||| |||||||| || |||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||||||||||||| |
|
|
| T |
29338815 |
ctttgcacaaaatgtatctcatctaattctcttcataaacatgattactcttgaaccacttagtacttagccaaaaagtgaggtagcttcaa |
29338906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 183787 - 184074
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
183787 |
aaattttgtttaatcttgcttttgtttcttgaa-aagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaaa |
183885 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaattgtg--aaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgag |
201 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
183886 |
caggtgtgtgataatgatttagttgtgaaaaaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaactag |
183980 |
T |
|
| Q |
202 |
tacttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
||||| |||| ||| |||||||| || ||||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||||||||||||| |
|
|
| T |
183981 |
tactttgcacaaaaagtatctcatctaattcttttcataaacatgattactcttgaaccacttagtacttagccaaaaagtgaggtagcttcaa |
184074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 14477576 - 14477872
Alignment:
| Q |
4 |
aaaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaa |
103 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14477576 |
aaaaatttgtctactcttgcttttgtttctcaaagatgaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaa |
14477675 |
T |
|
| Q |
104 |
acaggtgtgtgataatga-tttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgag |
201 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
14477676 |
acaggtgtgtgataatgattttagttgtg-aaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaactag |
14477769 |
T |
|
| Q |
202 |
tacttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacggtt |
300 |
Q |
| |
|
|| || |||| ||| ||| |||| || |||| |||||||||| ||| ||| |||||| ||| |||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
14477770 |
taatttgcacaaaaagtatatcatctaattctcttcataaacatgattattctggaaccacttagcacttagcctaaaagtgaggtagcttcaaactgtt |
14477869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15043349 - 15043556
Alignment:
| Q |
1 |
atgaaaatttt-gtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaa |
99 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||| || || |||| ||| ||||| |
|
|
| T |
15043349 |
atgaaaattttcgtctacttttgctttagtttcttgaa-aagaaaattgctcatgaacatcaatgtttgaagtgctcgaaaaagataaaa-attgagcaa |
15043446 |
T |
|
| Q |
100 |
acaaacaggtgtgtgataatgat-ttaattgtgaaaaaagcgcaaagccaaggtattggtttcct-gttttctaggtctttaattgactagaatttgaaa |
197 |
Q |
| |
|
| || |||||||||||||||||| ||| ||||| | |||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
15043447 |
a-aatcaggtgtgtgataatgatattatttgtg-agaaagcgcaaagccaaggtatcggtttcctatttttctaggt-----attttctagaatttgaaa |
15043539 |
T |
|
| Q |
198 |
cgagtacttagcacaaa |
214 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
15043540 |
ctagtactttgcacaaa |
15043556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 304
Target Start/End: Original strand, 10574543 - 10574710
Alignment:
| Q |
135 |
aaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttgaaacgagtacttagcacaaat-ttatctcatttagttct |
232 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| || |||| || ||||||||||| ||| ||| ||||||| |||| |||||||||||| |
|
|
| T |
10574543 |
aaagcgtaaagccaaggtattggtttcctgtttttctaagtattta-----ctggaatttgaaactagtgctttgcacaaaacttatatcatttagttct |
10574637 |
T |
|
| Q |
233 |
tctcataaacatttttactcttgaaccatgtagtactttgcct-aaatgtgaggtagcttcaaacggttatac |
304 |
Q |
| |
|
||||| |||||| ||| |||||||||| || |||| |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
10574638 |
tctcaaaaacatgcttattcttgaaccacttataacttagcctaaaaagtgaggtagcttcaaactgttatac |
10574710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 27352081 - 27352367
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||||| || ||||| |||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27352081 |
aaattttgtttaatcttgtttttgtttcttgaa-aagaaaattggtcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaacaaa |
27352179 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaaacgagta |
203 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27352180 |
caggtgtgtgataatgatttagttgtgaaaaaagcgcaaagccaaggtattggtttcctgtttttctaggtcttt-----actagaatttgaaactagta |
27352274 |
T |
|
| Q |
204 |
cttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaa |
295 |
Q |
| |
|
||| ||| ||| |||||||| || |||| |||||||||| |||||||||||||| |||||||| ||| ||| ||||| |||||||||| |
|
|
| T |
27352275 |
ctttacacaaaaagtatctcatctaattctcttcataaacatgattactcttgaaccacttagtacttagccaaaaagtgagttagcttcaaa |
27352367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 294
Target Start/End: Complemental strand, 36739010 - 36738760
Alignment:
| Q |
40 |
agaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaacaggtgtgtgataatgat-ttaattgtgaaaaaag |
138 |
Q |
| |
|
|||||| |||||||||| || || ||| |||||||||| ||||| |||| ||| |||||||| ||||||||||||| |||| ||| |||||| ||| | |
|
|
| T |
36739010 |
agaaaaatgctcatgaatatcaaagttagaagtgctcgaaagagtcaaat-attgagcaaacattcaggtgtgtgatagtgatattagttgtgagaaa-g |
36738913 |
T |
|
| Q |
139 |
cgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttgaaacgagtacttagcacaaa-tttatctcatttagttcttctc |
236 |
Q |
| |
|
||||||| ||| ||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
36738912 |
cgcaaagttaagatattggtttcccgtttttctaggtcttta-----ctagaatttaaaattagtactttgcacaaaatttatctcatttaattcttctc |
36738818 |
T |
|
| Q |
237 |
ataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
|||||| | ||| ||| |||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
36738817 |
ataaacttgattattctagaaccacttactacttagcctaaatgtgaggtagcttcaa |
36738760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 296
Target Start/End: Original strand, 21693849 - 21694100
Alignment:
| Q |
41 |
gaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa-caggtgtgtgataatgatttaa-ttgtgaaaaaag |
138 |
Q |
| |
|
||||| ||||||||||| | || | ||||||||||| |||||||||| || | |||||| | |||||||||||| ||||| ||| |||||| ||| | |
|
|
| T |
21693849 |
gaaaagtgctcatgaacctcaacttgtgaagtgctcgaaagagccaaa-gaatgagcaaaaatctcaggtgtgtgattatgatataagttgtgagaaa-g |
21693946 |
T |
|
| Q |
139 |
cgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttgaaacgagtacttagcac-aaatttatctcatttagttcttctc |
236 |
Q |
| |
|
|||||| |||||||||||||| | |||||| |||||| || ||||||||||||| | ||||||| |||| ||| |||| |||| ||||||| || |
|
|
| T |
21693947 |
cgcaaaaccaaggtattggttccttgtttttctaggtatt------actagaatttgaaccaagtactttgcacaaaacttatttcatatagttctcttc |
21694040 |
T |
|
| Q |
237 |
ataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaac |
296 |
Q |
| |
|
| | |||| ||| || |||||||| |||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
21694041 |
aaagacatgcttattcatgaaccatttagtacttagcctaaaagtgaggaagctccaaac |
21694100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 44504583 - 44504291
Alignment:
| Q |
1 |
atgaaaattttgtctattcttgcttttgtttctcaaagaagaaaa--ttgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagca |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
44504583 |
atgaaaattttgtctattcttgcttttgtttctcgaagaaaaaaaaattgctcatgaacattaatgtttgaagtgctcgaaagagccaagggattgagca |
44504484 |
T |
|
| Q |
99 |
aacaaacaggtgtgtgataatga-tttaattgtgaaaaaagcgcaaagccaaggtattggtttcctg-ttttctaggtctttaattgactagaatttgaa |
196 |
Q |
| |
|
||||| ||||||||||||| ||| |||| ||||| | ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
44504483 |
aacaatcaggtgtgtgatagtgattttagttgtg-agaaagcgcaaagccaatgtattggtttcctgtttttctaggtcttt-----gctagaatttgaa |
44504390 |
T |
|
| Q |
197 |
acgagtacttagcac-aaatttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
|| ||||||| |||| ||| |||||||| || ||||| |||||||||| ||| ||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
44504389 |
actagtactttgcacaaaaagtatctcatctaattcttttcataaacatgattattcttgaatcacttagtacttagcctaaatgtgaggtagcttcaa |
44504291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 352973 - 352676
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| ||||||||| |||||| || || |||| ||||||| | |||||||||| |||| ||||| || |
|
|
| T |
352973 |
aaattttgtttaatcttgcttgtgtttctcaaa--agaaaattgatcatgagcaccaaagtttaaagtgctagtaagagccaaa-gattgagcaat-aat |
352878 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaatt-gtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaa--tttgaaacga |
200 |
Q |
| |
|
|||||| ||||||||||| | ||| |||| ||| ||||||||||||||||||||||||||||||| ||||| ||| |||| || |||||||| | |
|
|
| T |
352877 |
caggtgagtgataatgatatgatttgtgagaaa-gcgcaaagccaaggtattggtttcctgtttttctaggc-----attcactaaaaattttgaaacta |
352784 |
T |
|
| Q |
201 |
gtacttagcacaaa-tttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacggt |
299 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||| | |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
352783 |
gtactttgcacaaaatttatttcatttagttcttctcagagacatgtttattcttgaaccatgtagtacttagcctaaatgtgaggtagcttcaaactgt |
352684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 294
Target Start/End: Original strand, 12185296 - 12185580
Alignment:
| Q |
5 |
aaattttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaa |
104 |
Q |
| |
|
||||||| | || |||||||| |||||||| || ||||||||||||||||||| || |||| ||||||||| |||||||||| |||| ||||| || |
|
|
| T |
12185296 |
aaattttatttaatcttgcttgtgtttctctaa--agaaaattgctcatgaacaccaaagtttaaagtgctcgtaagagccaaa-gattgagcaat-aat |
12185391 |
T |
|
| Q |
105 |
caggtgtgtgataatgatttaatt-gtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaa--tttgaaacga |
200 |
Q |
| |
|
|||||| ||||||||||| | ||| |||| ||| ||||||||||||||||||||||||||||||| ||||| ||| |||| || |||||||| | |
|
|
| T |
12185392 |
caggtgagtgataatgatatgatttgtgagaaa-gcgcaaagccaaggtattggtttcctgtttttctaggc-----attcactaaaaattttgaaacta |
12185485 |
T |
|
| Q |
201 |
gtacttagcacaaa-tttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||| |||| |||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12185486 |
gtactttgcacaaaatttatttcatttagttcttctcatatacatgtttatttttgaaccatgtagtacttagcctaaatgtgaggtagcttcaa |
12185580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 1953214 - 1953492
Alignment:
| Q |
8 |
ttttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaacag |
107 |
Q |
| |
|
||||||||| |||||||| ||| ||||||| ||||||||||||||||||| ||||||| ||||||||| ||||| |||| |||| |||| | | ||| |
|
|
| T |
1953214 |
ttttgtctaatcttgcttgtgtctctcaaa--agaaaattgctcatgaacaccaatgtttaaagtgctcgtaagagtcaaa-gattgagcata--atcag |
1953308 |
T |
|
| Q |
108 |
gtgtgtgataatgatttaattgtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttg--aaacgagtac |
204 |
Q |
| |
|
||| ||||||||||| |||||||| ||| |||||| ||||||||||||| || ||||||| ||||| ||| |||| ||||| |||| || || |
|
|
| T |
1953309 |
gtgagtgataatgatg-aattgtgagaaa-gcgcaacgccaaggtattggatttctgtttttctaggc-----attcactaaaatttttaaaactagaac |
1953401 |
T |
|
| Q |
205 |
ttagcacaaa-tttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaa |
294 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
1953402 |
tttgcacaaaatttatctcatttagttcgtctcataaacatgtttactcttgaaccacgtagtacttagcctaaatgtgaagtagcttcaa |
1953492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 295
Target Start/End: Complemental strand, 27953347 - 27953161
Alignment:
| Q |
105 |
caggtgtgtgataatgatttaa-ttgtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttgaaacgagt |
202 |
Q |
| |
|
|||||||||||||||||| | | |||||| ||| ||| |||| |||||||||||||||||||||| |||||| ||| |||| |||||||||| ||| |
|
|
| T |
27953347 |
caggtgtgtgataatgatatgagttgtgagaaa-gcgtaaagtcaaggtattggtttcctgtttttctaggt-----attcactaaaatttgaaactagt |
27953254 |
T |
|
| Q |
203 |
acttagcacaaatt-tatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaa |
295 |
Q |
| |
|
|||| ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| |||||||||| |
|
|
| T |
27953253 |
actttgcacaaaatctatctcatctagttcttctcataaacatgtttactcttgaaccacttagtacttagcctaaa-gtgagatagcttcaaa |
27953161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 1955286 - 1955569
Alignment:
| Q |
18 |
tcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattaagcaaacaaacaggtgtgtgata |
117 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||| |||||||| || || |||||||||| ||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
1955286 |
tcttgcttttgtgtcctaaa-aagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaact--caggtgtgtgatg |
1955381 |
T |
|
| Q |
118 |
atgattt-aattgtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaa-tttgaaacgagtacttagcacaaa |
214 |
Q |
| |
|
||||| | |||||||| ||| |||||||| ||||||||||||||| |||||| |||||| | | |||| || |||||||| ||||||| ||||||| |
|
|
| T |
1955382 |
atgatatgaattgtgagaaa-gcgcaaagtcaaggtattggtttcatgtttttctaggt-----actcactaaaaatttgaaactagtactttgcacaaa |
1955475 |
T |
|
| Q |
215 |
-tttatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaacggttatactat |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| ||||| |||||||| ||||||| |||| ||||||||| |||||||||| |
|
|
| T |
1955476 |
atttatctcatccagttcttctcataaacatgtttactcttaaaccacttagtacttagcctaaacgtgatatagcttcaatttgttatactat |
1955569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 295
Target Start/End: Original strand, 1960439 - 1960626
Alignment:
| Q |
105 |
caggtgtgtgataatgattt-aattgtgaaaaaagcgcaaagccaaggtattggtttcctgtttt-ctaggtctttaattgactagaatttgaaacgagt |
202 |
Q |
| |
|
|||||||||||||||||| | ||||| || |||| || | | ||||||||||| ||||| ||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
1960439 |
caggtgtgtgataatgatatgaattgagagaaaa-cgaatatccaaggtattgatttcccgtttttctaggtcttta-----ctagaatttgaaattagt |
1960532 |
T |
|
| Q |
203 |
acttagcacaaatt-tatctcatttagttcttctcataaacatttttactcttgaaccatgtagtactttgcctaaatgtgaggtagcttcaaa |
295 |
Q |
| |
|
| || ||||||| | |||||||| || ||||||| |||||||| || |||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
1960533 |
attttgcacaaaatgtatctcatctaattcttcttataaacatgattgttcttgaaccacttagtacttagccttaatgtgaggtagcttcaaa |
1960626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 1949012 - 1948946
Alignment:
| Q |
195 |
aaacgagtacttagcacaaa-tttatctcatttagttcttctcataaacatttttactcttgaacca |
260 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
1949012 |
aaactagtactttgcacaaaatttatctcttttagttcttctcataaacatgtttactcttgtacca |
1948946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1949206 - 1949128
Alignment:
| Q |
8 |
ttttgtctattcttgcttttgtttctcaaagaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaa |
88 |
Q |
| |
|
|||||| || |||||||| ||| ||||||| ||||||||||||||||||| ||||||| ||||||||| ||||| |||| |
|
|
| T |
1949206 |
ttttgtataatcttgcttgtgtctctcaaa--agaaaattgctcatgaacaccaatgtttaaagtgctcgtaagagtcaaa |
1949128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 12696983 - 12696949
Alignment:
| Q |
273 |
cctaaatgtgaggtagcttcaaacggttatactat |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
12696983 |
cctaaatgtgaggtagcttcaaactgttatactat |
12696949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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