View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_2 (Length: 662)
Name: NF19514_low_2
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 38893692 - 38894151
Alignment:
| Q |
1 |
aataatggagtccaaaagcggtgtcctatatatccttttcccccacaactccataaaccccccttccctttatnnnnnnnnttaaagtactttttaaagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||| |
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| T |
38893692 |
aataatggagtccaaaagcggtgtcctatatatccttttcccccacaactccataaaacccccttccctttataaaaaaaattaaagcattttttaaagg |
38893791 |
T |
|
| Q |
101 |
aaactgctttatggattcaaaggaatatgcattgcattgcatgcatatatatcttcttaatttcagcccttcaatagttttttaacaactttacaatctt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893792 |
aaacagctttatggattcaaaggaatatgcattgcattgcatgcatatatatcttcttaatttcagcccttcaatagttttttaacaactttacaatctt |
38893891 |
T |
|
| Q |
201 |
cctctagcactcaattgccacctttaccttagtgtaaaaagttatgagatatacacttaaatttctattttgatttagtaaatcaatatttcaacgtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38893892 |
cctctagcactcaattgccacctttaccttagtgtaaaaagttatgagatatacacttaaatttctattttgatttagtaaatcaatatttcaacgtgaa |
38893991 |
T |
|
| Q |
301 |
actgcaaagattaatattatctttagatcactagagtacgatcgataaatgtcttctttaaattttttaatattgttgcattctcaagatcgaatttgag |
400 |
Q |
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| T |
38893992 |
actgtaaaaattaatattatctttagatcactggagtacgatcgacaaatgtcttctttaactcttttaatattgttgcattctcaagaccggatttaag |
38894091 |
T |
|
| Q |
401 |
taggtaattctattaacctccttgctcctaattaataacttcaacatcaaaataatccac |
460 |
Q |
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| T |
38894092 |
taggtaattctattaacctccttgctcctaattaataacttcaacatcaaaataatccac |
38894151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 504 - 648
Target Start/End: Original strand, 38894192 - 38894336
Alignment:
| Q |
504 |
gaaaataacaaagaaattaaagacttccatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaac |
603 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894192 |
gaaaataacaaagaaattaaagactttcatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaac |
38894291 |
T |
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| Q |
604 |
accaagaaaatccctagtttgtccccaaacaccctcttcattttg |
648 |
Q |
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| T |
38894292 |
accaagaaaatccctagtttgtccccaaacaccctcttcattttg |
38894336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 624
Target Start/End: Original strand, 30516433 - 30516507
Alignment:
| Q |
549 |
aaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaacaccaagaaaatccctagtttg |
624 |
Q |
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|||||||||||| |||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
30516433 |
aaatcaaatccaaccgttgattgatgaagggtgacaaatggtttgcac-accaacaccaagaaaatccctagtttg |
30516507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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