View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19514_low_20 (Length: 285)

Name: NF19514_low_20
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19514_low_20
NF19514_low_20
[»] chr3 (10 HSPs)
chr3 (1-150)||(11494849-11494998)
chr3 (50-145)||(5968565-5968660)
chr3 (9-131)||(11488626-11488748)
chr3 (50-126)||(2922278-2922354)
chr3 (52-144)||(4133017-4133109)
chr3 (49-129)||(4057479-4057559)
chr3 (25-145)||(3872791-3872911)
chr3 (211-243)||(11494756-11494788)
chr3 (44-126)||(10187398-10187480)
chr3 (49-129)||(4077084-4077164)
[»] chr4 (1 HSPs)
chr4 (25-145)||(5991248-5991368)
[»] scaffold0603 (1 HSPs)
scaffold0603 (9-145)||(2097-2233)
[»] chr5 (1 HSPs)
chr5 (50-126)||(16449535-16449611)
[»] chr1 (1 HSPs)
chr1 (50-126)||(17314507-17314583)
[»] chr8 (1 HSPs)
chr8 (52-119)||(18390803-18390870)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 11494998 - 11494849
Alignment:
Q  1 ttcagttataaatatgacttgctatccattactgaaagcaaaattgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11494998 ttcagttataaatatgacttgctgtccattactgaaagcaaaattgcaaaggaagcgagggaaagaatggcgtaagattgctcatattccctccataatt 11494899  T
Q  101 atcgatgacgaattgatcacatgagtatcttgtccgggtgagtctataag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11494898 atcgatgacgaattgatcacatgagtatcttgtccgggtgagtctctaag 11494849  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 5968565 - 5968660
Alignment:
Q  50 aggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatcttgtccgggtgagtct 145  Q
    ||||||| ||||||||||||||||||||||||||| ||||| || ||||||||| | || ||| | ||||||||| | || ||| |||||||||||    
T  5968565 aggaagcaagggaaagagtggcgtaagattgctcacattccgtctataattatcaacgatgaaataatcacatgattttcatgttcgggtgagtct 5968660  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 11488748 - 11488626
Alignment:
Q  9 taaatatgacttgctatccattactgaaagcaaaattgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatga 108  Q
    ||||||||||| |||  ||||| ||  ||||||  ||||  ||||||| ||||||||||||| ||||||||||||| || ||   ||||||||| |||||    
T  11488748 taaatatgactcgctgcccattgctcgaagcaattttgcggaggaagcaagggaaagagtggagtaagattgctcacatacctgtcataattattgatga 11488649  T
Q  109 cgaattgatcacatgagtatctt 131  Q
     ||||||||||||||||| ||||    
T  11488648 tgaattgatcacatgagtttctt 11488626  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 2922278 - 2922354
Alignment:
Q  50 aggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagt 126  Q
    ||||||| ||||||| |||||||||| ||||||||  ||| ||||||| ||||||||| |||| |||||||||||||    
T  2922278 aggaagcaagggaaaaagtggcgtaacattgctcacgttctctccatagttatcgatggcgaactgatcacatgagt 2922354  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 4133017 - 4133109
Alignment:
Q  52 gaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatcttgtccgggtgagtc 144  Q
    ||||||||||||||||||||||||||||||||| ||||| ||  || ||||| |||   || |||||||||||||||| ||||  ||||||||    
T  4133017 gaagcgagggaaagagtggcgtaagattgctcacattccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtc 4133109  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 4057559 - 4057479
Alignment:
Q  49 aaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatc 129  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||| |||| || |||| ||| || | || |||||||||||    
T  4057559 aaggaagcgtgggaaagagtggcgtaagatttctcacattcccttcatatttgtcgacgacaaaatcataacatgagtatc 4057479  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 3872791 - 3872911
Alignment:
Q  25 tccattactgaaagcaaaattgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatga 124  Q
    |||||||||  ||||||  ||||  ||||||||||||||  ||||| |||| ||||||||  | ||  |||||||||| ||||||||| ||||||||| |    
T  3872791 tccattacttgaagcaagtttgcggaggaagcgagggaagaagtggtgtaaaattgctcacgtgcctgccataattattgatgacgaactgatcacataa 3872890  T
Q  125 gtatcttgtccgggtgagtct 145  Q
    || || ||||  |||||||||    
T  3872891 gtttcatgtctaggtgagtct 3872911  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 11494788 - 11494756
Alignment:
Q  211 agtaacatcgaaatactatattatagcattaac 243  Q
    |||||||||||||||||||||||||||||||||    
T  11494788 agtaacatcgaaatactatattatagcattaac 11494756  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 10187398 - 10187480
Alignment:
Q  44 ttgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagt 126  Q
    ||||| || |||| |||||||||||||| |||||||  ||| || ||  |||||||||| |||||| |||| |||||||||||    
T  10187398 ttgcagagcaagcaagggaaagagtggcataagattcttcacatacctgccataattattgatgacaaattaatcacatgagt 10187480  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 4077164 - 4077084
Alignment:
Q  49 aaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatc 129  Q
    ||||| ||| ||||||||||||| ||||||| |||| ||||||| |||| ||||| |  ||||| | || |||||||||||    
T  4077164 aaggacgcgtgggaaagagtggcataagatttctcacattcccttcatatttatcaacaacgaaatcatgacatgagtatc 4077084  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 5991248 - 5991368
Alignment:
Q  25 tccattactgaaagcaaaattgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatga 124  Q
    ||||||||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||| |    
T  5991248 tccattactggtagcaaagttgcagaggaagcgagggaaagagtggcgtaagattgctcatattcctgccatagttatcgatgatgaattgatcacataa 5991347  T
Q  125 gtatcttgtccgggtgagtct 145  Q
    || || ||||  |||||||||    
T  5991348 gtttcctgtctaggtgagtct 5991368  T

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Target: scaffold0603 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 2233 - 2097
Alignment:
Q  9 taaatatgacttgctatccattactgaaagcaaaattgcaaaggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatga 108  Q
    |||||||||||  || |||||||||| ||||||  || |  ||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  2233 taaatatgactcactgtccattactggaagcaagtttccggaggaagcaagggaaagagtggcgtaagattgcccacattccctccataattatagatga 2134  T
Q  109 cgaattgatcacatgagtatcttgtccgggtgagtct 145  Q
     |||||||| |||||||| || | | |||||||||||    
T  2133 tgaattgataacatgagtttcctattcgggtgagtct 2097  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 16449535 - 16449611
Alignment:
Q  50 aggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| |||||    
T  16449535 aggaagcgagggaaagagtggcgtaagattgctcatattccctccatagttatcgatgatgaacttatcacctgagt 16449611  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 17314507 - 17314583
Alignment:
Q  50 aggaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagt 126  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||||||    
T  17314507 aggaagcgaggaaaagagtggcgtaagattgctcacattccctccataattatcgatgataatttgatcacatgagt 17314583  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 18390803 - 18390870
Alignment:
Q  52 gaagcgagggaaagagtggcgtaagattgctcatattccctccataattatcgatgacgaattgatca 119  Q
    |||||||||||||||||||| ||||||| |||| ||||||| |||||||||| | |||||||||||||    
T  18390803 gaagcgagggaaagagtggcataagatttctcacattcccttcataattatcaacgacgaattgatca 18390870  T

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