View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_21 (Length: 282)
Name: NF19514_low_21
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_21 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 7833517 - 7833365
Alignment:
| Q |
130 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
229 |
Q |
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| T |
7833517 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcagaatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
7833418 |
T |
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| Q |
230 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgc |
282 |
Q |
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| T |
7833417 |
aattgagtttcaaaaaagaagagtgaagaaccaaaggaaataatagtgcatgc |
7833365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 7784054 - 7783902
Alignment:
| Q |
130 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
229 |
Q |
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| T |
7784054 |
gtataaagagtataagggcctcttaaaattaaatgacatgcataggtcagaatggtttccacattatttcggccagccactgaacagtttgaaaagattg |
7783955 |
T |
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| Q |
230 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgc |
282 |
Q |
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| T |
7783954 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgtatgc |
7783902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 7804122 - 7803970
Alignment:
| Q |
130 |
gtataaagagtataagggcctctcaaaattaaatgacatgcataggtcaggatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
229 |
Q |
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| T |
7804122 |
gtataaagagtataagggcctctcaaaattaaatgacatgcatagatcagaatggtttccacattatttcggccagccacggaacagtttgaaaagattg |
7804023 |
T |
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| Q |
230 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatgc |
282 |
Q |
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| T |
7804022 |
aattgagtttcaaaaaagaagagtgaagcaccaaaggacatcatagcgcatgc |
7803970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 184 - 281
Target Start/End: Original strand, 17294920 - 17295017
Alignment:
| Q |
184 |
gtttccacattatttcggccagccacggaacagtttgaaaagattgaattgagtttcaaaaaagaagagtgaagcaccaaaggacataatagtgcatg |
281 |
Q |
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| T |
17294920 |
gtttccacattattacggccagccatggtacagtttgaacagattgaattgagtttaaaaaaagaagagtgaagcaccaaaggaggtaatagtgcatg |
17295017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7784184 - 7784117
Alignment:
| Q |
1 |
acttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
68 |
Q |
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| T |
7784184 |
acttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
7784117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7804251 - 7804184
Alignment:
| Q |
1 |
acttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
68 |
Q |
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| T |
7804251 |
acttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
7804184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7833646 - 7833579
Alignment:
| Q |
1 |
acttcatcttcaacttattcatagcttttttcaggtcagaaacagggttggaaaccaacggagctacc |
68 |
Q |
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| T |
7833646 |
acttcatcttcaacttattcatagctttttccaggtcagaaacagggttggaaaccaacggagctacc |
7833579 |
T |
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