View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19514_low_23 (Length: 264)
Name: NF19514_low_23
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 8362224 - 8362445
Alignment:
| Q |
18 |
agtaattcacacttaatgcacttgctagagaagttaaggacaccattatcatcatgagcaacaccatgccaatagtattagttgatgccatgtttcaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8362224 |
agtaattcacacttaatgcacttgctagagaagttaaggacaccattatcatcatgagcaacaccattccaatagt------tgatgccatgtttcaaat |
8362317 |
T |
|
| Q |
118 |
cacaattgaaattaatttgttgt--ttatatgtttgtgtaaggaacagtaatgagaatcatatttatagataaactaattggagttgttacatgaattta |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8362318 |
cacaattgaaattaatttgttgtaattatatgtttgtgtaaggaacagtaatgagaatgatatttatagataaactaattggagttgttacatgaattta |
8362417 |
T |
|
| Q |
216 |
tggttgttaaacatatttggtgatctat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8362418 |
tggttgttaaacatatttggtgatctat |
8362445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University