View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19514_low_28 (Length: 252)

Name: NF19514_low_28
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19514_low_28
NF19514_low_28
[»] chr7 (9 HSPs)
chr7 (11-235)||(38188275-38188501)
chr7 (67-218)||(38167057-38167208)
chr7 (16-145)||(38597789-38597918)
chr7 (87-235)||(38150733-38150881)
chr7 (87-227)||(38158144-38158287)
chr7 (153-235)||(42796311-42796393)
chr7 (153-218)||(35073767-35073832)
chr7 (147-218)||(35100119-35100190)
chr7 (148-218)||(35084818-35084888)
[»] chr3 (1 HSPs)
chr3 (190-236)||(2224053-2224099)
[»] chr2 (2 HSPs)
chr2 (190-235)||(12410959-12411004)
chr2 (190-235)||(12423019-12423064)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 38188501 - 38188275
Alignment:
Q  11 ttattctcatcttgatgaaattaataaaaactagtatatattttctaattgatt--agttatggttttaatataagtcaaattctggtgtgtgttcgtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  38188501 ttattctcatcttgatgaaattaataaaaactagtatatattttctaattgattttagttatggttttaatataattcaaattctggtgtgtgttcgtta 38188402  T
Q  109 ttaatcgcagtaacaatgaagaggaggtctaaaaagtccaagattgagttgccagattctattttatcgattatattctcgaagttaggtttgaaggatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38188401 ttaatcgcagtaacaatgaagaggaggtctaaaaagtccaagattgagttgccagattctattttatctattatattctcgaagttaggtttgaaggatt 38188302  T
Q  209 tggtgaaaacaagcacactgtccaaac 235  Q
    |||||||||||||||||||||||||||    
T  38188301 tggtgaaaacaagcacactgtccaaac 38188275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 38167208 - 38167057
Alignment:
Q  67 ttatggttttaatataagtcaaattctggtgtgtgttcgttattaatcgcagtaacaatgaagaggaggtctaaaaagtccaagattgagttgccagatt 166  Q
    ||||| ||||||| ||| |  ||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  38167208 ttatgcttttaatttaattataattctggtgtgtgttcattactaattgcagtagcaatgaagaggaggtctaaaaagcccaagattgagttgcctgatt 38167109  T
Q  167 ctattttatcgattatattctcgaagttaggtttgaaggatttggtgaaaac 218  Q
     |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  38167108 gtattttatcgattatattttcaaagttaggtttgaaggatttggtgaaaac 38167057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 38597789 - 38597918
Alignment:
Q  16 ctcatcttgatgaaattaataaaaactagtatatattttctaattgattagttatggttttaatataagtcaaattctggtgtgtgttcgttattaatcg 115  Q
    |||||| ||||||||||||||| ||| | ||||||||||| ||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||  |    
T  38597789 ctcatcatgatgaaattaataataacaaatatatattttcaaattgattagttatgcttttaatatagttcaaattctggtgtgtgttcgttattaactg 38597888  T
Q  116 cagtaacaatgaagaggaggtctaaaaagt 145  Q
    ||||||||||||||||||||||||||||||    
T  38597889 cagtaacaatgaagaggaggtctaaaaagt 38597918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 38150881 - 38150733
Alignment:
Q  87 aaattctggtgtgtgttcgttattaatcgcagtaacaatgaagaggaggtctaaaaagtccaagattgagttgccagattctattttatcgattatattc 186  Q
    |||||||||||| |  ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||  |||||||||| ||| ||     
T  38150881 aaattctggtgtttactcgttattaattgcagtagcaatgaagaggaggtctaaaaagcccaagattgagttgcctgattgcattttatcgaatatcttt 38150782  T
Q  187 tcgaagttaggtttgaaggatttggtgaaaacaagcacactgtccaaac 235  Q
    || | ||||||||||||||||||||||||||||||||||||||| ||||    
T  38150781 tcaaggttaggtttgaaggatttggtgaaaacaagcacactgtcaaaac 38150733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 38158287 - 38158144
Alignment:
Q  87 aaattctggtgtgtgttcgttattaatcgcagtaacaatgaagagga---ggtctaaaaagtccaagattgagttgccagattctattttatcgattata 183  Q
    |||||||| ||| || ||||||||||| |||||| ||||||||||||   ||||||||||| |||||||||  ||||| |||| ||||||||| | ||||    
T  38158287 aaattctgctgtttgctcgttattaattgcagtagcaatgaagaggaagaggtctaaaaagcccaagattgcattgcctgattgtattttatcaaatata 38158188  T
Q  184 ttctcgaagttaggtttgaaggatttggtgaaaacaagcacact 227  Q
    || || ||||||||||||||||||||||| ||||||||||||||    
T  38158187 ttttcaaagttaggtttgaaggatttggtaaaaacaagcacact 38158144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 42796311 - 42796393
Alignment:
Q  153 tgagttgccagattctattttatcgattatattctcgaagttaggtttgaaggatttggtgaaaacaagcacactgtccaaac 235  Q
    ||||||||| |||| |||| ||||   ||| || || ||||| ||||||||||||||||||||||||||| || |||||||||    
T  42796311 tgagttgcctgattgtattatatcttatatcttttccaagtttggtttgaaggatttggtgaaaacaagcgcattgtccaaac 42796393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 35073832 - 35073767
Alignment:
Q  153 tgagttgccagattctattttatcgattatattctcgaagttaggtttgaaggatttggtgaaaac 218  Q
    ||||||||| ||||||||| ||||   |||||| || ||||||| |||||||||||||||||||||    
T  35073832 tgagttgcctgattctattatatcttatatattttccaagttagctttgaaggatttggtgaaaac 35073767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 35100190 - 35100119
Alignment:
Q  147 caagattgagttgccagattctattttatcgattatattctcgaagttaggtttgaaggatttggtgaaaac 218  Q
    ||||| ||||||||| ||||||||| ||||   ||| || || ||||||| |||||||||||||||||||||    
T  35100190 caagagtgagttgcctgattctattatatcttatatcttttccaagttagctttgaaggatttggtgaaaac 35100119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 35084888 - 35084818
Alignment:
Q  148 aagattgagttgccagattctattttatcgattatattctcgaagttaggtttgaaggatttggtgaaaac 218  Q
    |||| ||||||||| ||||||||| ||||   ||| || || ||||||| |||||||||||||||||||||    
T  35084888 aagagtgagttgcctgattctattatatcttatatcttttccaagttagctttgaaggatttggtgaaaac 35084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 2224099 - 2224053
Alignment:
Q  190 aagttaggtttgaaggatttggtgaaaacaagcacactgtccaaact 236  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  2224099 aagttaggtttgaaggatttggtgaaaacaatcacattgtccaaact 2224053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 12411004 - 12410959
Alignment:
Q  190 aagttaggtttgaaggatttggtgaaaacaagcacactgtccaaac 235  Q
    |||||| ||| ||||||||||||||||||||| ||| |||||||||    
T  12411004 aagttaagttggaaggatttggtgaaaacaagtacattgtccaaac 12410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 12423064 - 12423019
Alignment:
Q  190 aagttaggtttgaaggatttggtgaaaacaagcacactgtccaaac 235  Q
    |||||| ||| ||||||||||||||||||||| ||| |||||||||    
T  12423064 aagttaagttggaaggatttggtgaaaacaagtacattgtccaaac 12423019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University