View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19514_low_29 (Length: 251)

Name: NF19514_low_29
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19514_low_29
NF19514_low_29
[»] chr5 (3 HSPs)
chr5 (56-107)||(29953063-29953114)
chr5 (215-250)||(29953312-29953347)
chr5 (120-154)||(29953110-29953144)
[»] chr7 (1 HSPs)
chr7 (56-130)||(43837423-43837497)
[»] chr6 (1 HSPs)
chr6 (97-154)||(34011394-34011451)
[»] chr1 (2 HSPs)
chr1 (63-151)||(16426297-16426385)
chr1 (61-154)||(32740712-32740805)
[»] chr2 (1 HSPs)
chr2 (62-154)||(32201031-32201123)


Alignment Details
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 29953063 - 29953114
Alignment:
Q  56 gtgttgtggtgtcaatgtcctaagttatttacattaatagtgtcgacgtgtc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  29953063 gtgtagtggtgtcaatgtcctaagttatttacattaatagtgttgacgtgtc 29953114  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 29953312 - 29953347
Alignment:
Q  215 gtgtgttttcaatttttgtatgctcatatggttctg 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  29953312 gtgtgttttcaatttttgtatgctcatatggttctg 29953347  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 29953110 - 29953144
Alignment:
Q  120 gtgtcaggtgttcgagtcaaagtccatgcttcata 154  Q
    |||||||||||||||||||||||||||||||||||    
T  29953110 gtgtcaggtgttcgagtcaaagtccatgcttcata 29953144  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 43837423 - 43837497
Alignment:
Q  56 gtgttgtggtgtcaatgtcctaagttatttacattaatagtgtcgacgtgtctgtatccgtgttgtgtcaggtgt 130  Q
    |||| |||||||||||||||| |||| |||||||||  |||||||| ||||| || || ||||||||| ||||||    
T  43837423 gtgtagtggtgtcaatgtcctgagttttttacattagcagtgtcgaggtgtccgtgtcagtgttgtgtaaggtgt 43837497  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 34011394 - 34011451
Alignment:
Q  97 gtcgacgtgtctgtatccgtgttgtgtcaggtgttcgagtcaaagtccatgcttcata 154  Q
    ||||||||||| || || ||||||||||| |||| || ||||||||||||||||||||    
T  34011394 gtcgacgtgtccgtgtcagtgttgtgtcacgtgtccgtgtcaaagtccatgcttcata 34011451  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 16426385 - 16426297
Alignment:
Q  63 ggtgtcaatgtcctaagttatttacattaatagtgtcgacgtgtctgtatccgtgttgtgtcaggtgttcgagtcaaagtccatgcttc 151  Q
    ||||||| ||||||| | | ||||||||||  |||| |||||||| || || |||||||||||| ||| || |||||||||| ||||||    
T  16426385 ggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcagatgtccgtgtcaaagtccgtgcttc 16426297  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 32740805 - 32740712
Alignment:
Q  61 gtggtgtcaatgtcctaagttatttacattaatagtgtcgacgtgtctgtatccgtgttgtgtcaggtgttcgagtcaaagtccatgcttcata 154  Q
    ||||||||| |||||||  || |||||||||||||||||||  || | || || |||| ||||||| |||||| ||| |||||  |||||||||    
T  32740805 gtggtgtcagtgtcctatattttttacattaatagtgtcgatatgaccgtgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgcttcata 32740712  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 32201031 - 32201123
Alignment:
Q  62 tggtgtcaatgtcctaagttatttacattaatagtgtcgacgtgtctgtatccgtgttgtgtcaggtgttcgagtcaaagtccatgcttcata 154  Q
    |||||||  |||||||  || |||||||||   ||||||||||||| || || |||| |||||||||||||| ||   |||||||||||||||    
T  32201031 tggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcata 32201123  T

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