View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_32 (Length: 237)
Name: NF19514_low_32
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17593995 - 17594228
Alignment:
| Q |
1 |
cacaatcaacagcacgctgcctcgacgctatcaattttcccaatcacccaggtgctattgatttcaatggccta-------------gctgtaactgtga |
87 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
17593995 |
cacaatcaacagcacgctgcctcggcgctatcaattttcccaatcacccaggtgctatcgatttcaatggcctaaatactctagactgctgtaactgtga |
17594094 |
T |
|
| Q |
88 |
aaaccaagtcttttcataaatttgcttcggttttgatctttcnnnnnnnnnnnnnnnncggtggttgtttttataatagttgcttatgttgtttgatttt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594095 |
aaaccaagtcttttcataaatttgcttcggttttgatctttcaaaataaaataaaaaacggtggttgtttttataatagttgcttatgttgtttgatttt |
17594194 |
T |
|
| Q |
188 |
aatggacttatcataaactataattgaaggttta |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
17594195 |
aatggacttatcataaactataattgaaggttta |
17594228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26907008 - 26906775
Alignment:
| Q |
1 |
cacaatcaacagcacgctgcctcgacgctatcaattttcccaatcacccaggtgctattgatttcaatggcctag-------------ctgtaactgtga |
87 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
26907008 |
cacaatcaacagcacgcggcctcggcgctatcaattttcccaatcacccaggtgctatcgatttcaatggcctaaatactttagactactgtaactgtga |
26906909 |
T |
|
| Q |
88 |
aaaccaagtcttttcataaatttgcttcggttttgatctttcnnnnnnnnnnnnnnnncggtggttgtttttataatagttgcttatgttgtttgatttt |
187 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26906908 |
aaaccaagtcttttcataaatttgtttcgattttgatctttcaaaataaaataaaaaacggtgattgtttttataatagttgcttatgttgtttgatttt |
26906809 |
T |
|
| Q |
188 |
aatggacttatcataaactataattgaaggttta |
221 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
26906808 |
aatggacttgtcataaactataattgaaggttta |
26906775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20195176 - 20195409
Alignment:
| Q |
1 |
cacaatcaacagcacgctgcctcgacgctatcaattttcccaatcacccaggtgctattgatttcaatggcctag-------------ctgtaactgtga |
87 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |
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| T |
20195176 |
cacaatcaacagcacgctgcctcggcgctatcaattttcccaatcacccaggtgctatcgatttcaatggcctaaatactctagactactgtaacattga |
20195275 |
T |
|
| Q |
88 |
aaaccaagtcttttcataaatttgcttcggttttgatctttcnnnnnnnnnnnnnnnncggtggttgtttttataatagttgcttatgttgtttgatttt |
187 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20195276 |
aaaccaagtcttttcataaatttgcttcgattttgatctttcaaaataaaataaaaaacggtggttgtttttataatagttgcttatgttgtttgatttt |
20195375 |
T |
|
| Q |
188 |
aatggacttatcataaactataattgaaggttta |
221 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
20195376 |
aatggacttatcataaactataattgaaggttta |
20195409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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