View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_33 (Length: 236)
Name: NF19514_low_33
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 40759647 - 40759855
Alignment:
| Q |
17 |
acctaacacatccaagcaagcaaccaaaataagcttcttattcaaacagaagcatactccaatgaacagatgcttttttagttcacggatcagattgaaa |
116 |
Q |
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| T |
40759647 |
acctaacacatccaagcaagcaaccaaaataagcttcttattcaaacagaagcatactccaatgaacagatgcttttttagttcacggatcagattgaaa |
40759746 |
T |
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| Q |
117 |
tgattaggaaaattgatttactctacttcgagggtagagaagcctcctaagaaga--aaaagactaatttctcatttcataatcattttcattgtcaata |
214 |
Q |
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| T |
40759747 |
tgattaggaaaattgatttactctacttcgagggtagagaagcctcctaagaagaagaaaagactaatttctcagttcataatcattttcattgtcaata |
40759846 |
T |
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| Q |
215 |
cagaattat |
223 |
Q |
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|| |||||| |
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| T |
40759847 |
caaaattat |
40759855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 40766789 - 40766854
Alignment:
| Q |
23 |
cacatccaagcaagcaaccaaaataagcttcttattcaaacagaagcatactccaatgaacagatg |
88 |
Q |
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| T |
40766789 |
cacatcaaagcaagcaacacaaataaactccttatcaaaacagaagcatactccaatgagcagatg |
40766854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 42833420 - 42833310
Alignment:
| Q |
115 |
aatgattaggaaaattgatttactctacttcgagggtagagaagcctcctaagaaga---------aaaagactaatttctcatttcataatcattttca |
205 |
Q |
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| T |
42833420 |
aatgattaggaaaattgatttactctactttgagggtagagaagcctcctaagaaaagataagaagaaaagactaatttctcatttcatgatcattttcc |
42833321 |
T |
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| Q |
206 |
ttgtcaataca |
216 |
Q |
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| T |
42833320 |
ttgtcaataca |
42833310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 48507207 - 48507161
Alignment:
| Q |
123 |
ggaaaattgatttactctacttcgagggtagagaagcctcctaagaa |
169 |
Q |
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| T |
48507207 |
ggaaaattgatttactctaattcgagggtagagaagtatcctaagaa |
48507161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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