View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19514_low_34 (Length: 229)

Name: NF19514_low_34
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19514_low_34
NF19514_low_34
[»] chr5 (2 HSPs)
chr5 (137-208)||(39945757-39945828)
chr5 (19-71)||(39946697-39946749)
[»] chr8 (4 HSPs)
chr8 (137-185)||(1494461-1494509)
chr8 (137-185)||(23096919-23096967)
chr8 (19-71)||(23096795-23096847)
chr8 (19-68)||(1494578-1494627)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 39945828 - 39945757
Alignment:
Q  137 gcatgcaatatatactctaaagcgttaaaaacttttagaatatatactactgtatattctaccaatttatga 208  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  39945828 gcatgcaatatatactctaaagcgttaaaagcttctagaatatatactactgtatattctaccaatttatga 39945757  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 39946749 - 39946697
Alignment:
Q  19 agtatcatttgtactcatatctatcatatataaaattattcaacttttccgtt 71  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39946749 agtatcatttgtactcatatctatcatctataaaattattcaacttttccgtt 39946697  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 1494509 - 1494461
Alignment:
Q  137 gcatgcaatatatactctaaagcgttaaaaacttttagaatatatacta 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1494509 gcatgcaatatatactctaaagcgttaaaaacttttagaatatatacta 1494461  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 23096919 - 23096967
Alignment:
Q  137 gcatgcaatatatactctaaagcgttaaaaacttttagaatatatacta 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23096919 gcatgcaatatatactctaaagcgttaaaaacttttagaatatatacta 23096967  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 23096795 - 23096847
Alignment:
Q  19 agtatcatttgtactcatatctatcatatataaaattattcaacttttccgtt 71  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  23096795 agtatcatttgtactcacatctatcatctacaaaattattcaacttttccgtt 23096847  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 1494627 - 1494578
Alignment:
Q  19 agtatcatttgtactcatatctatcatatataaaattattcaacttttcc 68  Q
    ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  1494627 agtatcatttgtactcatatctatcgtctacaaaattattcaacttttcc 1494578  T

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