View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_4 (Length: 586)
Name: NF19514_low_4
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Complemental strand, 30805448 - 30804890
Alignment:
| Q |
13 |
gaaatgaacccaaaagtaataacattatcataccaattccacagaacagcatgcattgcagttctatccttagcagcatccttttctgcaaaaagcgcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805448 |
gaaatgaacccaaaagtaataacattatcataccaattccacagaacagcatgcattgcagttctatccttagcagcatccttttctgcaaaaagcgcca |
30805349 |
T |
|
| Q |
113 |
ctaccctttcatcagacacaagctcagcaaccactttagccctcactttactcccttctccactgcctccgagcaccctactcgccaccctcaccgcggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805348 |
ctaccctttcatcagacacaagctcagcaaccactttagccctcactttactcccttctccactgcctccgagcaccctactcgccaccctcaccgcggc |
30805249 |
T |
|
| Q |
213 |
accagcactaacatgacacctacctaacagccctaaaaacacccctttcgccgtctccgccccagcggtccctgctgccgtaaaataagcctccacagca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805248 |
accagcactaacatgacacctacctaacagccctaaaaacacccctttcgccgtctccgccccagcggtccctgctgccgtaaaataagcctccacagca |
30805149 |
T |
|
| Q |
313 |
gacacccaaacaccttctggaatccctctatcaatcgccattcccctcaattccttctccgcttcgacgtgcctccctaaccctaaccatgccttcatcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805148 |
gacacccaaacaccttctggaatccctctatcaatcaccattcccctcaattccttctccgcttcgacgtgcctccctaaccctaaccatgccttcatcg |
30805049 |
T |
|
| Q |
413 |
ccaaaacagaaagacttggatgatcatcaccaccttcagcagaatctctcaaaaccttcacacacttaaccacactctcaaattcctctttctgcaaatg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805048 |
ccaaaacagaaagacttggatgatcatcaccaccttcagcagaatctctcaaaaccttcacacacttaaccacactctcaaattcctctttctgcaaatg |
30804949 |
T |
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| Q |
513 |
aatcgccgctataaacctcaaaaccttccacctcaaacctcgaatctccaccttctctt |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30804948 |
aatcgccgctataaacctcaaaaccttccacctcaaacctcgaatctccaccttctctt |
30804890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 30806884 - 30806812
Alignment:
| Q |
13 |
gaaatgaacccaaaagtaataacattatcataccaattccacagaacagcatgcattgcagttctatccttag |
85 |
Q |
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|||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
30806884 |
gaaatgaaccaaagagtaataacattatcataccaattccaaagaacagcatgcattgctgttctatccttag |
30806812 |
T |
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