View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19514_low_7 (Length: 441)
Name: NF19514_low_7
Description: NF19514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19514_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 31 - 421
Target Start/End: Complemental strand, 36467903 - 36467513
Alignment:
| Q |
31 |
cacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacg |
130 |
Q |
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| T |
36467903 |
cacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacg |
36467804 |
T |
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| Q |
131 |
cataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcc |
230 |
Q |
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| T |
36467803 |
cataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcc |
36467704 |
T |
|
| Q |
231 |
tctgtgttgaattccatatcctttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccat |
330 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467703 |
tctgtgttgaattccatatcccttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagttctttttcccttgctcattgcaaacaccat |
36467604 |
T |
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| Q |
331 |
taccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaat |
421 |
Q |
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| T |
36467603 |
taccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactatcaat |
36467513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 417
Target Start/End: Complemental strand, 28738898 - 28738738
Alignment:
| Q |
258 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
356 |
Q |
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||||||| |||||||| | | |||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||||| || | || |
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| T |
28738898 |
tcatcatttgtcacattactaatgcatttgtaaccattggaattctcttttcccttgctcactgcaaacaccattaccatggttgaattccatactgcct |
28738799 |
T |
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| Q |
357 |
gcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactat |
417 |
Q |
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|||||| |||| ||||||||| | || | |||| |||| |||||||||||||||||||| |
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| T |
28738798 |
acatctctatcactacgaacattgatgtcgttattgacttctatatcttcagtatcactat |
28738738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 28718587 - 28718448
Alignment:
| Q |
258 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
356 |
Q |
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||||||| ||||||||| ||||||||||||| |||| | | |||| ||||| ||||||| |||||||||||||||||||||| |||| || | || || |
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| T |
28718587 |
tcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattaccatggttgaatttcatatcgcct |
28718488 |
T |
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| Q |
357 |
gcatctccatcagtacgaacatcgttgctgctattaactt |
396 |
Q |
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| T |
28718487 |
gtatctctatcagtacgaacatcgttgccgctattaactt |
28718448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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