View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19515_high_1 (Length: 588)

Name: NF19515_high_1
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19515_high_1
NF19515_high_1
[»] chr3 (7 HSPs)
chr3 (196-571)||(19647083-19647458)
chr3 (40-155)||(19647499-19647614)
chr3 (203-358)||(3170134-3170292)
chr3 (223-358)||(27547227-27547361)
chr3 (238-344)||(21587185-21587291)
chr3 (208-280)||(44126751-44126824)
chr3 (223-278)||(13100788-13100844)
[»] chr2 (7 HSPs)
chr2 (360-571)||(18772943-18773154)
chr2 (209-280)||(21294925-21294997)
chr2 (241-329)||(17830753-17830842)
chr2 (208-339)||(25232017-25232148)
chr2 (104-145)||(19084708-19084749)
chr2 (209-280)||(21289627-21289699)
chr2 (103-144)||(7394643-7394684)
[»] chr7 (2 HSPs)
chr7 (205-358)||(23818710-23818863)
chr7 (255-344)||(22477038-22477127)
[»] chr8 (6 HSPs)
chr8 (223-343)||(28350603-28350724)
chr8 (97-145)||(28350467-28350515)
chr8 (89-144)||(22274954-22275009)
chr8 (203-262)||(29185553-29185612)
chr8 (93-134)||(15007260-15007301)
chr8 (205-261)||(17703045-17703101)
[»] chr5 (11 HSPs)
chr5 (223-343)||(25214454-25214575)
chr5 (223-343)||(25278604-25278725)
chr5 (89-139)||(29742025-29742075)
chr5 (204-358)||(24213307-24213461)
chr5 (204-280)||(24228300-24228377)
chr5 (223-329)||(12026314-12026420)
chr5 (92-139)||(28663522-28663569)
chr5 (90-138)||(21154243-21154291)
chr5 (90-138)||(21161378-21161426)
chr5 (103-145)||(25590181-25590223)
chr5 (208-303)||(7823115-7823210)
[»] chr4 (2 HSPs)
chr4 (91-145)||(17350048-17350102)
chr4 (89-139)||(12753572-12753620)
[»] chr6 (1 HSPs)
chr6 (204-280)||(19441157-19441234)
[»] chr1 (3 HSPs)
chr1 (204-280)||(11444049-11444126)
chr1 (213-339)||(29547774-29547900)
chr1 (213-280)||(29530177-29530245)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 196 - 571
Target Start/End: Complemental strand, 19647458 - 19647083
Alignment:
Q  196 tatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647458 tatatatcattacttcacaagtgtgtcctttacattacaacttgagttctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatca 19647359  T
Q  296 ctaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaacaaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647358 ctaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaacaaac 19647259  T
Q  396 acatctatccttggtaaactgatttagtatacaactcccaaaaccttctttataagtgccagcacactttgcattacaacaagattgatcacattcatcc 495  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647258 acatctatccttggtaaactgatttggtatacaactcccaaaaccttctttataagtgccagcacactttgcattacaacaagattgatcacattcatcc 19647159  T
Q  496 tggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgattgaaagtacaagtgcataggt 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647158 tggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgattgaaagtacaagtgcataggt 19647083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 19647614 - 19647499
Alignment:
Q  40 atagatgaatgaattcttgatccacccttcctttaataatcaaccttcaaaatctcagattgatagagcttcgtgctaataacgtgttatgaaattaatc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19647614 atagatgaatgaattcttgatccacccttcctttaataatcaaccttcaaaatctccgattgatagagcttcgtgctaataacgtgttatgaaattaatc 19647515  T
Q  140 aaaagttgcattgtat 155  Q
    ||||||||||||||||    
T  19647514 aaaagttgcattgtat 19647499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 203 - 358
Target Start/End: Original strand, 3170134 - 3170292
Alignment:
Q  203 cattacttcacaagtgtgtcctttacattacaacttgagtcctatttatagga------tacaaatagtaagtgaatgatcaaatgaaattaaacatcac 296  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||    
T  3170134 cattacttca-aagtgtgttttttacattacaacttgagtcctatttataggtatagggtacaaatagtaagtgaatgatcaaatgtaattaaacatcac 3170232  T
Q  297 taacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 358  Q
    |||||||||||||| ||||| |||||||  ||| |||||||| ||||| |||| ||||||||    
T  3170233 taacaatccattcattaatgagagttat--gaatgtggaagaacaaggatatgaacatccac 3170292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 358
Target Start/End: Complemental strand, 27547361 - 27547227
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 321  Q
    |||||||| | ||| ||||||||||||||||||||| ||| || | || |||||||| ||| ||| ||| | |||||||||| |||||| |||||||| |    
T  27547361 ctttacatcaaaacatgagtcctatttataggataccaatcagcaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaat 27547262  T
Q  322 tataagaacgtggaagatcaaggttatggacatccac 358  Q
    ||||||||  || ||||||||  | ||||||||||||    
T  27547261 tataagaatttgaaagatcaa--taatggacatccac 27547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 344
Target Start/End: Original strand, 21587185 - 21587291
Alignment:
Q  238 tgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaa 336  Q
    |||||||||||||||||| |||||| || ||||||||||||||| | | ||||  ||||||||| || | |||| ||||||| |||||| ||| ||||||    
T  21587185 tgagtcctatttataggacacaaatgagcaagtgaatgatcaaa-gcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  337 gatcaagg 344  Q
    ||| ||||    
T  21587284 gattaagg 21587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 44126751 - 44126824
Alignment:
Q  208 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    ||||||||||||||| || |||||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  44126751 cttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa 44126824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 13100844 - 13100788
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatca 278  Q
    |||||||| | ||| ||||||||||||||||||||||||| || |||||||||||||    
T  13100844 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgatca 13100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 9e-90; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 360 - 571
Target Start/End: Original strand, 18772943 - 18773154
Alignment:
Q  360 tacaataatcgatttctagcttctataggaacaaacacatctatccttggtaaactgatttagtatacaactcccaaaaccttctttataagtgccagca 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||| |||||    
T  18772943 tacaataatcgatttctagcttctataggaacaaacacatctatccttggtaaactgatttggaatacaagtcccaaaaccttgtttataagtggcagca 18773042  T
Q  460 cactttgcattacaacaagattgatcacattcatcctggtagcatgttcccatgccaatacgacacaaattgtttgaggaaggatcttgattgaaagtac 559  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  18773043 cactttgcattacaacaagattgatcacattcaccttgatagcatgttcccatcccaatacgacacaaattctttgaggaaggattttgattgaaagtac 18773142  T
Q  560 aagtgcataggt 571  Q
    ||||||||||||    
T  18773143 aagtgcataggt 18773154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 21294925 - 21294997
Alignment:
Q  209 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    |||||||||||||| || |||||||||| | ||||||||||||||||||||||| || |||||||||||||||    
T  21294925 ttcacaagtgtgtcattcacattacaacataagtcctatttataggatacaaatgagcaagtgaatgatcaaa 21294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 17830753 - 17830842
Alignment:
Q  241 gtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaa 329  Q
    |||||||||||| |||||||||| | ||||||| ||||| ||| ||| ||| | |||||||||| |||||| |||| |||||||||||||    
T  17830753 gtcctatttatatgatacaaataagcaagtgaaagatcacatgtaatcaaagagcactaacaattcattcactaattggagttataagaa 17830842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 25232148 - 25232017
Alignment:
Q  208 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatcca 306  Q
    |||| ||||||||| |||||||||||||  |  ||||||||||| ||| |||||| || |||||||||||||||   ||||||  | ||||||| || ||    
T  25232148 cttctcaagtgtgttctttacattacaatatatgtcctatttatgggacacaaatgagcaagtgaatgatcaaa-ccaattaaggaccactaaccataca 25232050  T
Q  307 ttcagtaatgggagttataagaacgtggaagat 339  Q
    || | |||||||||||||| ||| |||||||||    
T  25232049 tttactaatgggagttataggaaggtggaagat 25232017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 19084749 - 19084708
Alignment:
Q  104 agagcttcgtgctaataacgtgttatgaaattaatcaaaagt 145  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  19084749 agagcttcgtgctgataacgtgttatgaaattgatcaaaagt 19084708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 21289627 - 21289699
Alignment:
Q  209 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    |||| ||||||||| || |||||||||  | |||||||||||||||| |||||| || |||||||||||||||    
T  21289627 ttcataagtgtgtcattcacattacaatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 21289699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 7394643 - 7394684
Alignment:
Q  103 tagagcttcgtgctaataacgtgttatgaaattaatcaaaag 144  Q
    ||||| |||||||| |||||||||||||||||||||| ||||    
T  7394643 tagagtttcgtgctgataacgtgttatgaaattaatccaaag 7394684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 205 - 358
Target Start/End: Original strand, 23818710 - 23818863
Alignment:
Q  205 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatc 304  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  23818710 ttacttcacaagtgtgtactttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatttaattaaacatcactaagaatc 23818809  T
Q  305 cattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 358  Q
    || ||| ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  23818810 cactcactaatgggagttataagaatatggaagatcaaggatatggacatccac 23818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 344
Target Start/End: Original strand, 22477038 - 22477127
Alignment:
Q  255 atacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaagatcaagg 344  Q
    ||||||||| ||| |||||| ||||||| |||||||||||  | ||| | |||||| |||||| |||||||||||  |||||||||||||    
T  22477038 atacaaatattaattgaatggtcaaatgtaattaaacatccttgacagttcattcactaatggaagttataagaatatggaagatcaagg 22477127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 28350603 - 28350724
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 320  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  28350603 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 28350702  T
Q  321 ttataagaacgtggaagatcaag 343  Q
    |||| ||||| ||||||||||||    
T  28350703 ttat-agaacttggaagatcaag 28350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 28350467 - 28350515
Alignment:
Q  97 gattgatagagcttcgtgctaataacgtgttatgaaattaatcaaaagt 145  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  28350467 gattgatagagcttcgtgctgataacgtgttatgaaattaatccaaagt 28350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 22275009 - 22274954
Alignment:
Q  89 aaatctcagattgatagagcttcgtgctaataacgtgttatgaaattaatcaaaag 144  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||    
T  22275009 aaatctcatattgatagagcttcgtgttgataacgtgttatgaaattaatccaaag 22274954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 29185553 - 29185612
Alignment:
Q  203 cattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat 262  Q
    |||||||||||||||||||  ||||||||||||  |  ||||||||||||||| ||||||    
T  29185553 cattacttcacaagtgtgttttttacattacaatatatgtcctatttataggacacaaat 29185612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 15007301 - 15007260
Alignment:
Q  93 ctcagattgatagagcttcgtgctaataacgtgttatgaaat 134  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  15007301 ctcaaattgatagagcttcgtgctgagaacgtgttatgaaat 15007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 17703101 - 17703045
Alignment:
Q  205 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaa 261  Q
    ||||||||| ||||||| |||||||| ||||  |  |||||||||||||||||||||    
T  17703101 ttacttcactagtgtgtgctttacatgacaatgtatgtcctatttataggatacaaa 17703045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 25214454 - 25214575
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 320  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25214454 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25214553  T
Q  321 ttataagaacgtggaagatcaag 343  Q
    |||| ||||| ||||||||||||    
T  25214554 ttat-agaacttggaagatcaag 25214575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 25278604 - 25278725
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 320  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25278604 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25278703  T
Q  321 ttataagaacgtggaagatcaag 343  Q
    |||| ||||| ||||||||||||    
T  25278704 ttat-agaacttggaagatcaag 25278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 29742025 - 29742075
Alignment:
Q  89 aaatctcagattgatagagcttcgtgctaataacgtgttatgaaattaatc 139  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29742025 aaatctcagattgatagagcttcgtgctgataacgtgttatgaaattaatc 29742075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 204 - 358
Target Start/End: Original strand, 24213307 - 24213461
Alignment:
Q  204 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaa 302  Q
    |||||||||||||| ||| |||||||||||||  |  ||||||||||||||| |||||| || |||||||||||||||   ||||||| | || |||| |    
T  24213307 attacttcacaagtatgtactttacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa-ccaattaaagaccaataacca 24213405  T
Q  303 tccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 358  Q
    | |||| | ||||||  |||||||||| ||||||||| ||||  || |||||||||    
T  24213406 tacatttactaatggaggttataagaaggtggaagattaaggccatcgacatccac 24213461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 24228300 - 24228377
Alignment:
Q  204 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    |||||||||||||||||| |||||||||||||  |   ||||||||||||||||||| | || |||||||||||||||    
T  24228300 attacttcacaagtgtgtactttacattacaatatagatcctatttataggatacaattgagcaagtgaatgatcaaa 24228377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 12026314 - 12026420
Alignment:
Q  223 ctttacattacaacttgagtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 321  Q
    |||||||| | ||| |||||| |||||| |||||||||||| | |||||||||||| | || ||| ||| | |||||||||| |||||| ||||| ||||    
T  12026314 ctttacatcaaaacatgagtcttatttagaggatacaaataagcaagtgaatgatcca-tgcaatcaaagagcactaacaattcattcactaatgagagt 12026412  T
Q  322 tataagaa 329  Q
    ||||||||    
T  12026413 tataagaa 12026420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 28663522 - 28663569
Alignment:
Q  92 tctcagattgatagagcttcgtgctaataacgtgttatgaaattaatc 139  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||||    
T  28663522 tctcagatcgttagagcttcgtgctgataacgtgttatgaaattaatc 28663569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 21154291 - 21154243
Alignment:
Q  90 aatctcagattgatagagcttcgtgctaataacgtgttatgaaattaat 138  Q
    ||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  21154291 aatctcatattgttagagcttcgtgttgataacgtgttatgaaattaat 21154243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 21161426 - 21161378
Alignment:
Q  90 aatctcagattgatagagcttcgtgctaataacgtgttatgaaattaat 138  Q
    ||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  21161426 aatctcatattgttagagcttcgtgttgataacgtgttatgaaattaat 21161378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 25590223 - 25590181
Alignment:
Q  103 tagagcttcgtgctaataacgtgttatgaaattaatcaaaagt 145  Q
    ||||||| |||||| |||||||||||||||||||||| |||||    
T  25590223 tagagctccgtgctgataacgtgttatgaaattaatctaaagt 25590181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 7823115 - 7823210
Alignment:
Q  208 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaat 303  Q
    |||||||||||| || ||||||| | ||| | |||||||||||||||| |||||| || ||||||||| ||| ||| ||| ||| | ||||||||||    
T  7823115 cttcacaagtgtttc-tttacatcaaaacataagtcctatttataggacacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaat 7823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 17350102 - 17350048
Alignment:
Q  91 atctcagattgatagagcttcgtgctaataacgtgttatgaaattaatcaaaagt 145  Q
    ||||||||| | |||||||||||||| |||||||||||||||||| |||||||||    
T  17350102 atctcagatcgttagagcttcgtgctgataacgtgttatgaaattgatcaaaagt 17350048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 12753572 - 12753620
Alignment:
Q  89 aaatctcagattgatagagcttcgtgctaataacgtgttatgaaattaatc 139  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  12753572 aaatctcagattgatag--cttcgtgctgataacgtgttatgaaattaatc 12753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 19441157 - 19441234
Alignment:
Q  204 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    |||||||||||||||||||| ||| |||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  19441157 attacttcacaagtgtgtccgttatattacaatatatgtcctatttataggacacaaatgagcaagtgaatgatcaaa 19441234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 11444049 - 11444126
Alignment:
Q  204 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    ||||||||||||||||||  || |||||| ||  | |||||||||||||||| |||||| || |||||||||||||||    
T  11444049 attacttcacaagtgtgtaattcacattataatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 11444126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 339
Target Start/End: Complemental strand, 29547900 - 29547774
Alignment:
Q  213 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcag 311  Q
    ||||||||| |||||||||||||  |  ||||||||||||||| | |||| || |||||||||||||||  |||||||  | ||||||| || |||| |     
T  29547900 caagtgtgttctttacattacaatataggtcctatttataggacataaatgagcaagtgaatgatcaaa-caaattaaggaccactaaccatgcatttac 29547802  T
Q  312 taatgggagttataagaacgtggaagat 339  Q
    |||||||  ||||| ||| |||||||||    
T  29547801 taatggggattataggaaggtggaagat 29547774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 29530245 - 29530177
Alignment:
Q  213 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 280  Q
    ||||||||| |||||||||||||  |  |||||||||||| || |||||| || |||||||||||||||    
T  29530245 caagtgtgttctttacattacaatataggtcctatttatatgacacaaatgagcaagtgaatgatcaaa 29530177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University