View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19515_high_4 (Length: 305)
Name: NF19515_high_4
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19515_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 15038837 - 15039108
Alignment:
| Q |
19 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccagaataatgcaagttgtgaagacc |
118 |
Q |
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| T |
15038837 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccataataatgcaagttgtcaagacc |
15038936 |
T |
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| Q |
119 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgctcacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
218 |
Q |
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| T |
15038937 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgcacacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
15039036 |
T |
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| Q |
219 |
ctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatatactatgcaaaagt |
290 |
Q |
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| T |
15039037 |
ctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatatactatgcaaaagt |
15039108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 15029568 - 15029650
Alignment:
| Q |
208 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatatactatgcaaaagt |
290 |
Q |
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| T |
15029568 |
cagaccaaattctacctcattttccaacatattttcatgagtgtaattagaacttcgtctctaaacatatactatacaaaagt |
15029650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 15008269 - 15008351
Alignment:
| Q |
208 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatatactatgcaaaagt |
290 |
Q |
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| T |
15008269 |
cagaccaaattctaccacattttccaacatattttcatgagtgtaattggaacttcatctctaaacatatagtatacaaaagt |
15008351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 15022386 - 15022468
Alignment:
| Q |
208 |
cagaccaaattctacctcattttccaacatattttcacgagtgtaattagtaattcgttactaaacatatactatgcaaaagt |
290 |
Q |
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| T |
15022386 |
cagaccaaattctaccacattttccaacatattttcatgagtgtaattggaacttcatctctaaacatatagtatacaaaagt |
15022468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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