View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19515_low_2 (Length: 909)
Name: NF19515_low_2
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19515_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 101 - 896
Target Start/End: Complemental strand, 43092010 - 43091215
Alignment:
| Q |
101 |
atacacagtaatgtgcaataaacattgaaattaagcacaagatgatatccaaaattcacacaaaagcagcctttactacatcattagcaagtttactact |
200 |
Q |
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| T |
43092010 |
atacacagtaatgtgcaataaacattgaaattaagcacaagatgatatccaaaattcacacaaaagcagcctttactacatcattagcaagtttactact |
43091911 |
T |
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| Q |
201 |
actgcatcctaaaaccaatgaaattgacttcaaaatcttccacatccctttactattcccatttctcttactcttaacaacttctttcccattttccggt |
300 |
Q |
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| T |
43091910 |
actgcatcctaaaaccaatgaaattgacttcaaaatcttccacatccctttactattcccatttctcttactcttaacaacttctttcccattttccggt |
43091811 |
T |
|
| Q |
301 |
gtcggaaacatcgtcatcggctccctccgacttctgctctgtctatttctaatgtcactaagctgcatctccttggaagacatcctggaactcgacgaca |
400 |
Q |
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| T |
43091810 |
gtcggaaacatcgtcatcggctccctccgacttctgctctgtctatttctaatgtcactaagctgcatctccttggaagacatcctggaactcgacgaca |
43091711 |
T |
|
| Q |
401 |
ttccaaacataaacaaaaaccatctagattttgtcggactcctcacaagtgaaaccttccctcccattgatgtgtagtcaccagcaaaactctttacatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091710 |
ttccaaacataaacaaaaaccatctagattttgtcggactcctcacaagtgaaaccttccctcccattgatgtgtagtcaccagcaaaactctttacatt |
43091611 |
T |
|
| Q |
501 |
cacactaccctttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagta |
600 |
Q |
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| T |
43091610 |
cacactaccctttacttcttcttcatttctcttactcttcaagttagctatagaaccattactagatttcatggcctttgaatttgaagtgggtttagca |
43091511 |
T |
|
| Q |
601 |
caannnnnnnggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattctt |
700 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091510 |
caatttttttggttatgaggaacatattgatgatctttgaagggaatgagtttgccacagaagattatgttgtcatgaattgttgaagtgttgaattctt |
43091411 |
T |
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| Q |
701 |
cactgaaaaactcaaacaagttnnnnnnnnnnnnnnnnnnnnggtgatccttgccataattggaaaaatcacctcgttgaggtgaaattgtggaatttgg |
800 |
Q |
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| T |
43091410 |
cactgaaaaactcaaacaagttatcatcatcatcatcatcatggtgatccttgccataattggaaaaatcaccccgttgaggtgaaattgtggaatttgg |
43091311 |
T |
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| Q |
801 |
aaggtcacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttcatgtgagta |
896 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43091310 |
aaggtcacaaagtgataaagtttcttcttcttcataatcatcatactcatcttgtagcaaagtactttcttcattccctacttcttgatgtgagta |
43091215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43092087 - 43092010
Alignment:
| Q |
1 |
ttaattgtacaaattagacttgt--ccttcattctgagttttgacaaataatatatcctctaatggcttcttagataa |
76 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092087 |
ttaattgtacaaattagacttgtgtccttcattctgagttttgacaaataatatatcctctaatggcttcttagataa |
43092010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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