View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19515_low_4 (Length: 400)
Name: NF19515_low_4
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19515_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 43742517 - 43742148
Alignment:
| Q |
1 |
ttctatgctccctggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattg |
100 |
Q |
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| T |
43742517 |
ttctatgctccctggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgacttaattgaaaaattg |
43742418 |
T |
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| Q |
101 |
ggttgggttgaaatcatatgtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatnnn |
200 |
Q |
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| T |
43742417 |
gattgggttgaaatcatatgtagaaaatcttaggcaattaatgaggaaaatcaaaatatgaccataaattagtctaaatttccagttttcatgacatgaa |
43742318 |
T |
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| Q |
201 |
nnnngatgtagaggaattggcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaacca |
300 |
Q |
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| T |
43742317 |
aaaagatgtagaggaattggcgtttaagatcggaagacaatgacttagtgggaaaggattagaaaataagggaagagaaagagactgcttgttcaaacca |
43742218 |
T |
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| Q |
301 |
gttaatgagagggaattccacaaattacacaaattaataagtactcctcacaatacaatgttagaagttagaaccaaga |
379 |
Q |
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| T |
43742217 |
gtaaatgagagggaattc---------cacaaattaataagtactcctcacaatacaatgttagaagttagaaccaaga |
43742148 |
T |
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