View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19515_low_5 (Length: 394)
Name: NF19515_low_5
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19515_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 42552620 - 42552243
Alignment:
| Q |
1 |
taaataataacctaatcaaaactaaatgacttaaaactgctcttattcttcttttttcgataagcggaaattctattaaaagcaactaggttggtatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42552620 |
taaataataacctaatcaaaactaaatgacttaaaactgctcttattcttcttttttcgataagtggaaattctattaaaagcaactaggttggtatcaa |
42552521 |
T |
|
| Q |
101 |
tagcacacacgcaaatttaccccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552520 |
tagcacacacgcaaatttaccccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaata |
42552421 |
T |
|
| Q |
201 |
aatgctgtcatcacnnnnnnnnnnnnggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgc |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42552420 |
aatgctgtcatcagaaaaagaaaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgc |
42552321 |
T |
|
| Q |
301 |
aaatcatgttaacagagacattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
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| T |
42552320 |
aaatcatgttaacagagacattaatgctttgagcagcagaacgaatttcaagcggaaaaatctcactaggcaccaacc |
42552243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 378
Target Start/End: Original strand, 1238930 - 1239077
Alignment:
| Q |
231 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
330 |
Q |
| |
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| T |
1238930 |
aagaagatgaagagtccaaacttcatgtggcacaacatggtggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
1239029 |
T |
|
| Q |
331 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
| |
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|||| || || |||| ||||| |||||||| ||||| |||||||||| |
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|
| T |
1239030 |
gagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaacc |
1239077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 378
Target Start/End: Original strand, 42517549 - 42517696
Alignment:
| Q |
231 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
330 |
Q |
| |
|
|||||||| || | |||||||||||||| || | ||| | ||||||| |||||||| | |||| ||| |||||||||||||||| ||||| | |||| |
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| T |
42517549 |
aagaagatgaatagtccaaacttcatgtggcacaacatggcggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaacattgacacttt |
42517648 |
T |
|
| Q |
331 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
| |
|
|||| || || || | ||||| || ||||| ||||| |||||||||| |
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|
| T |
42517649 |
gagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaacc |
42517696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 42517468 - 42517520
Alignment:
| Q |
150 |
gacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaa |
202 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| | |||||||||||||| |
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| T |
42517468 |
gacatttcttcaattggaacacctttggtctccggcaaaaacttgtaaataaa |
42517520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 122 - 378
Target Start/End: Original strand, 18233714 - 18233970
Alignment:
| Q |
122 |
ccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcacnnnnnnn |
221 |
Q |
| |
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||||||||| ||| | ||||| || ||||||||||||| ||||||||| |||| ||||| || | ||||||||||||||| | |||||||| |
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| T |
18233714 |
ccaataaggatgtttctcccatacggttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatcacaacaacg |
18233813 |
T |
|
| Q |
222 |
nnnnnggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacat |
321 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
18233814 |
aaaaaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacat |
18233913 |
T |
|
| Q |
322 |
taatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
| |
|
| || |||||||| || ||||||| ||| || || || || ||||| |||||||||| |
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|
| T |
18233914 |
tgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaacc |
18233970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 378
Target Start/End: Original strand, 35922170 - 35922317
Alignment:
| Q |
231 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||| || ||||| ||| ||||| | || ||| ||| |||||| ||||| ||||| | |||| |
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| T |
35922170 |
aagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacacttt |
35922269 |
T |
|
| Q |
331 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
| |
|
|||||||||| ||||| || | ||||| |||||||| | |||||||| |
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| T |
35922270 |
gagcagccgatcgaatctccaatggaaagatctcacttgtcaccaacc |
35922317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 378
Target Start/End: Complemental strand, 36202877 - 36202730
Alignment:
| Q |
231 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
330 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||||| | ||||| ||| ||||| | |||||| ||| |||||| ||||| || || | |||| |
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| T |
36202877 |
aagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgtttacacttt |
36202778 |
T |
|
| Q |
331 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaacc |
378 |
Q |
| |
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|||| || |||||||| || | || |||||||||||||| ||||||| |
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|
| T |
36202777 |
gagctgcagaacgaatctccaatgggaaaatctcactaggaaccaacc |
36202730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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