View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19515_low_7 (Length: 234)
Name: NF19515_low_7
Description: NF19515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19515_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5088149 - 5087933
Alignment:
| Q |
1 |
cagagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttctac |
100 |
Q |
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| T |
5088149 |
cagagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttctac |
5088050 |
T |
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| Q |
101 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatggccatacatgtacttttgtggggaatgggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5088049 |
taaatggatgcataacaaagactccaatagtatagatactaaattcagaggcaatctttttataaatggccatacatgtacttttgtggggaatgggaat |
5087950 |
T |
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| Q |
201 |
ccttttgatccttctat |
217 |
Q |
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||||||||||||||||| |
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| T |
5087949 |
ccttttgatccttctat |
5087933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 5097297 - 5097391
Alignment:
| Q |
3 |
gagacgatcccgaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacaacttcccttccatagctctattcttttc |
97 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5097297 |
gagatgatcccaaagtggtttgaacatcaaagcaaacaaccgacaatttctttctggtatcggaacgacttcccttccatagctctattcttttc |
5097391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 26642012 - 26642080
Alignment:
| Q |
101 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatgg |
169 |
Q |
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| T |
26642012 |
taaatggatgcataacaaggactccaatagtatagattttaaattcgtaggcaatctttttataaatgg |
26642080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 26747978 - 26748046
Alignment:
| Q |
101 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatgg |
169 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| |
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| T |
26747978 |
taaatggatgcataacaaggactccaatagtatagattttaaattcgtaggcaatctttttataaatgg |
26748046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 26829181 - 26829259
Alignment:
| Q |
101 |
taaatggatgcataacaaagactccaatagtatagatactaatttcagaggcaatctttttataaatggccatacatgt |
179 |
Q |
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||||||||| |||||||| ||||| ||||||||||| ||| |||||| ||||| ||||||||||||||||| ||||| |
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| T |
26829181 |
taaatggattcataacaaggactcaaatagtatagactttaaattcagatgcaatatttttataaatggccatgcatgt |
26829259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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