View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_1 (Length: 662)
Name: NF19516_high_1
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 14 - 646
Target Start/End: Complemental strand, 43554293 - 43553661
Alignment:
| Q |
14 |
ttctcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaat |
113 |
Q |
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| T |
43554293 |
ttctcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaat |
43554194 |
T |
|
| Q |
114 |
gttgctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctg |
213 |
Q |
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| T |
43554193 |
gttgctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctg |
43554094 |
T |
|
| Q |
214 |
catcatttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaa |
313 |
Q |
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| T |
43554093 |
catcatttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaa |
43553994 |
T |
|
| Q |
314 |
tggtacaaacctattgcactgccaagatagatatggcaacagtgtcttacatcttgcagtttcaggcggtcgccataaggtgagaaattgatgggagttc |
413 |
Q |
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| T |
43553993 |
tggtacaaacctattgcactgccaagatagatatggcaacagtgtcttacatcttgcagtttcaggcggtcgccataaggtgagaaattgatgggagttc |
43553894 |
T |
|
| Q |
414 |
taaatatatttaactagtgttttaacctgtgcaacatacggagagataattttagtttatttatatccatattgcattttcttactgaaaagtcggtaac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
43553893 |
taaatatatttaactagtgttttaacctgtgcaacatacggagagataattttagtttatttatatacgtgttgcattttcttactgaaaagtcggtaac |
43553794 |
T |
|
| Q |
514 |
tgttgtaatttgaccgatttgaatgatgtaaataacgaaaaataataattaagatttttcgaatgtttacnnnnnnncatgataatacaagtaaacaata |
613 |
Q |
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| T |
43553793 |
tgttgtaatttgaccgatttgaatgatgtaaataacgaaaaataataattaagatttttcgaatgtttactttttttcatgataatgcaagtaaacaata |
43553694 |
T |
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| Q |
614 |
tatcaggcatcaaatactgttagtagtatatgg |
646 |
Q |
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| T |
43553693 |
tatcaggcatcaaatactgttagtagtatatgg |
43553661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 43550289 - 43549726
Alignment:
| Q |
17 |
tcaagtgatcgacgagaatgggaattcggcattgcatcatgcttgtaataaaggacacagagagactgtatggatcctactaaaacgcgattcaaatgtt |
116 |
Q |
| |
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|||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||| || |
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| T |
43550289 |
tcaagtgatcgacgagaaagggaatacagcattgcatcatgcttgttataaaggacactttgagattgtatggatcctactaagtcgcgattcaaaactt |
43550190 |
T |
|
| Q |
117 |
gctttacaatacaacaacaatggttatacaccattgcaccttgcagtaatgaacggaaaagtctcgatcctcgatgattttgtgtcaggaagtgctgcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| || || || |||||||| | ||| || |||||||| || |||| |||| | |
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| T |
43550189 |
gctttacaatacaacaacaatggttatacaccattgcatcttgcagtgattaaggggaaagtctcaacccttgactattttgtggtagtaagtactgcgt |
43550090 |
T |
|
| Q |
217 |
catttcattatctaacaagagaagaagagacggtatttcatttagccgtgagatatggatgctatgatgctttggttttcttggtgcaagtttccaatgg |
316 |
Q |
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||||| |||| ||||||||||||||||| ||| ||||| |||| |||||||||||||| ||||| ||||| |||||||||||| |||| || |||| |
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| T |
43550089 |
actttcactatcccacaagagaagaagagacagtacttcatctagctgtgagatatggatgttatgacgctttagttttcttggtgagagttgcctatgg |
43549990 |
T |
|
| Q |
317 |
tacaaacctattgcactgccaagatagatatggcaacagtgtcttacatcttgcagtttcaggcggtcgccataaggtgagaaattgatgggagttctaa |
416 |
Q |
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|||||| ||| ||||| | ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || ||| ||| ||| | |
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| T |
43549989 |
tacaaatctagtgcacagacaagataaatatggcaacactgtcttacatctcgcagtttcaggcggtcgccataaggtgagaagtttatgtgagctctga |
43549890 |
T |
|
| Q |
417 |
atatatttaactagtgttttaacctgtgcaacatacggagagataattttagtttatttatatccatattgcattttcttactgaaaagtcggtaactgt |
516 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
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| T |
43549889 |
atatatttaactagtgttttattctgtgcaacgtacggggaaataattttagtttaattatatccatattgcattttcttattgaaaagt-agtaactgt |
43549791 |
T |
|
| Q |
517 |
tgtaatttgaccgatttgaatgatgtaaataacgaaaaataataattaagatttttcgaatgttt |
581 |
Q |
| |
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|||||||||| |||| |||||| |||||| ||||| ||| | |||||||||||| ||||||| |
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| T |
43549790 |
tgtaatttgagagattgaaatgatttaaatattgaaaagtaacatttaagatttttctaatgttt |
43549726 |
T |
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