View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19516_high_10 (Length: 494)

Name: NF19516_high_10
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19516_high_10
NF19516_high_10
[»] chr4 (16 HSPs)
chr4 (13-387)||(39804831-39805224)
chr4 (391-476)||(39804086-39804172)
chr4 (209-291)||(31655473-31655555)
chr4 (215-317)||(32892986-32893090)
chr4 (202-293)||(55861845-55861936)
chr4 (203-280)||(50131024-50131101)
chr4 (235-316)||(38949087-38949169)
chr4 (237-317)||(23133075-23133156)
chr4 (197-276)||(23135502-23135580)
chr4 (196-278)||(28695723-28695805)
chr4 (237-320)||(38380456-38380540)
chr4 (247-294)||(20262110-20262157)
chr4 (212-275)||(20787367-20787430)
chr4 (235-312)||(49011915-49011993)
chr4 (209-278)||(33266887-33266956)
chr4 (202-279)||(46521467-46521544)
[»] chr1 (15 HSPs)
chr1 (199-320)||(44920178-44920300)
chr1 (207-316)||(14758527-14758637)
chr1 (207-315)||(13792026-13792135)
chr1 (202-293)||(8462853-8462944)
chr1 (245-320)||(30529360-30529436)
chr1 (207-293)||(41649854-41649940)
chr1 (210-293)||(35508361-35508444)
chr1 (201-278)||(3483002-3483079)
chr1 (230-293)||(51681631-51681694)
chr1 (206-278)||(45925459-45925532)
chr1 (205-287)||(31499939-31500021)
chr1 (197-227)||(40053251-40053281)
chr1 (237-294)||(5423797-5423854)
chr1 (209-278)||(43512747-43512816)
chr1 (261-293)||(4521060-4521092)
[»] chr5 (11 HSPs)
chr5 (200-320)||(248485-248607)
chr5 (202-316)||(20125682-20125795)
chr5 (245-307)||(4857266-4857329)
chr5 (201-293)||(34032142-34032234)
chr5 (208-294)||(42877213-42877299)
chr5 (204-293)||(13978684-13978773)
chr5 (207-319)||(14116477-14116590)
chr5 (218-294)||(42265415-42265491)
chr5 (207-278)||(8208147-8208218)
chr5 (210-275)||(25767595-25767660)
chr5 (203-279)||(27146836-27146912)
[»] chr8 (11 HSPs)
chr8 (230-320)||(43238165-43238256)
chr8 (207-320)||(20142463-20142577)
chr8 (236-320)||(14237125-14237210)
chr8 (237-316)||(23984252-23984332)
chr8 (235-316)||(33285953-33286035)
chr8 (207-293)||(14855636-14855722)
chr8 (207-278)||(44254194-44254265)
chr8 (207-320)||(4166463-4166577)
chr8 (208-266)||(12787817-12787875)
chr8 (210-282)||(29487123-29487195)
chr8 (234-278)||(42022660-42022704)
[»] chr7 (7 HSPs)
chr7 (207-320)||(44319879-44319993)
chr7 (207-320)||(6771805-6771919)
chr7 (207-320)||(6775199-6775313)
chr7 (234-320)||(5495994-5496081)
chr7 (210-312)||(43210991-43211093)
chr7 (237-320)||(26200-26283)
chr7 (207-278)||(17883380-17883451)
[»] chr3 (13 HSPs)
chr3 (239-317)||(49682167-49682246)
chr3 (201-320)||(3973775-3973895)
chr3 (201-319)||(4009511-4009630)
chr3 (201-320)||(3995982-3996102)
chr3 (203-278)||(11465692-11465767)
chr3 (207-294)||(29484887-29484975)
chr3 (219-290)||(34285330-34285402)
chr3 (235-293)||(32606434-32606492)
chr3 (200-320)||(21813180-21813297)
chr3 (239-293)||(31294370-31294424)
chr3 (208-278)||(50368473-50368543)
chr3 (202-275)||(24313514-24313587)
chr3 (234-278)||(11692728-11692772)
[»] chr2 (5 HSPs)
chr2 (212-316)||(18734325-18734430)
chr2 (239-320)||(32438106-32438188)
chr2 (235-316)||(33962971-33963053)
chr2 (206-278)||(18375029-18375101)
chr2 (212-276)||(37597460-37597524)
[»] scaffold0027 (1 HSPs)
scaffold0027 (230-320)||(122489-122580)
[»] scaffold0633 (1 HSPs)
scaffold0633 (207-293)||(5056-5142)
[»] chr6 (6 HSPs)
chr6 (202-294)||(29988380-29988470)
chr6 (207-278)||(29407971-29408042)
chr6 (205-313)||(26295554-26295662)
chr6 (216-275)||(17124622-17124681)
chr6 (247-309)||(7340638-7340700)
chr6 (230-294)||(5678522-5678586)
[»] scaffold0036 (2 HSPs)
scaffold0036 (204-244)||(62626-62666)
scaffold0036 (206-273)||(21268-21335)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 39805224 - 39804831
Alignment:
Q  13 aatataagggacggattnnnnnnntatctaaaaaacttggcctataaaactctttgatagtgttttctatttttctataatgtagtgtattgtaaagtaa 112  Q
    |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  39805224 aatataagggacggattaaaaaattatctaaaaaacttggcctataaaactctttgatagtgttttctatttttatataatgtagtatattgtaaagtaa 39805125  T
Q  113 atttgagttgttattatgaaaggtgctcccacaaagacaactaaaaattcagacagttataaaggcatctaaaaaatgagaagtattattttatgggtct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||    
T  39805124 atttgagttgttattatgaaaggtgctcccacaaagacaactaaaaattcagacagttacaaaagcgtctaaaaaatgaaaagtattattttatgggtct 39805025  T
Q  213 tgttaacgagt-----gtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaa-ttttgatacattaaat 306  Q
    |||||||||||     | |||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||| ||||| ||||||||||||||||    
T  39805024 tgttaacgagtcgagtgccttgagggtactctttaaggttttccaattaaaaaattattatttgaaaaaatttaacacttcaatttttgatacattaaat 39804925  T
Q  307 gcacaattttccat-------------ttaaaattttcaaagaataccctaaaagcactcgttgacatttccatcattttatttgttcaaatgt 387  Q
    |||||||||| |||             || ||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  39804924 gcacaatttttcataaaaaatttactatttaaagttttaaagaatgccctaaaagcacttgttaacatttccctcattttatttgttcagatgt 39804831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 39804172 - 39804086
Alignment:
Q  391 ttctacaactgatcaaatcggttactgaaagttgatcttccttaatatactagatgtaggataatagaggt-tattaatccaataag 476  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  39804172 ttctacaactgaacaaatccgctactgaaagttgatcttccttaatatactagatgtaggataatagacgtctattaatccaataag 39804086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 31655473 - 31655555
Alignment:
Q  209 gtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaat 291  Q
    |||||||||||||||| | | |||| ||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  31655473 gtcttgttaacgagtgcccttagggcactttttaaggtttcccaattaaaaaattattctttaaaaaagtttaacacttcaat 31655555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 32892986 - 32893090
Alignment:
Q  215 ttaacgagtgtcttgagggtactcttt-aaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaa 312  Q
    ||||||||||| || |||  ||||||| |||||||||||||||| || ||||| || |||||||||||||||||||||||| ||| |||| |||||||||    
T  32892986 ttaacgagtgttttaaggacactcttttaaggtttttcaattaagaatttatttttaaaaaaagtttaacatttcaattttcgatgcattgaatgcacaa 32893085  T
Q  313 ttttc 317  Q
    |||||    
T  32893086 ttttc 32893090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 55861845 - 55861936
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    |||||||||||||||||||||||| || ||  |  ||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||    
T  55861845 tttatgggtcttgttaacgagtgttttaagaatgttctttaaggtttttcaaataaaaaatgattctttagaaaagattaacttttcaattt 55861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 50131024 - 50131101
Alignment:
Q  203 ttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagttt 280  Q
    |||||||||||||||||||||| | |||||| | ||||||||||||  ||||||| |||||||||||| |||||||||    
T  50131024 ttatgggtcttgttaacgagtgccctgagggcattctttaaggtttcccaattaagaaattattctttgaaaaagttt 50131101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 38949169 - 38949087
Alignment:
Q  235 actctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaatttt 316  Q
    |||||||||| |||| ||||||||||||||||  |||||||| ||||||| ||||||||  ||| |||| |||||||||||||    
T  38949169 actctttaagattttccaattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttt 38949087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 23133156 - 23133075
Alignment:
Q  237 tctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttc 317  Q
    |||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||  ||| |||| ||| ||||||||||    
T  23133156 tctttatggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatgcattgaatacacaattttc 23133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 23135580 - 23135502
Alignment:
Q  197 attattttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaa 276  Q
    ||||||||| |||||||||||||||||||| | || | ||||||||||| |||  ||| |||||||||||| ||||||||    
T  23135580 attatttta-gggtcttgttaacgagtgtcctaagtgcactctttaaggatttctaataaaaaaattattccttaaaaaa 23135502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 28695723 - 28695805
Alignment:
Q  196 tattattttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||| |||||||||||||||||||||||| | | |||| ||||||||||| ||   ||| || |||||||| |||||||||||    
T  28695723 tatttttttatgggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagt 28695805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 38380456 - 38380540
Alignment:
Q  237 tctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttccat 320  Q
    ||||||| ||||  ||||||| ||||| |||||| ||||||||||||| ||||||||  ||  ||||||||||| ||||||||||    
T  38380456 tctttaaagtttcccaattaataaatttttctttgaaaaagtttaacacttcaatttccgaagcattaaatgcataattttccat 38380540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 20262110 - 20262157
Alignment:
Q  247 ttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    |||| ||||||||||||||| |||||||||||| || |||||||||||    
T  20262110 ttttaaattaaaaaattattttttaaaaaagttaaatatttcaatttt 20262157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 20787367 - 20787430
Alignment:
Q  212 ttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaa 275  Q
    ||||||||||||||| | | || ||||||||||| |||| ||| ||||||||||| ||||||||    
T  20787367 ttgttaacgagtgtcctaaaggcactctttaaggatttttaataaaaaaattattttttaaaaa 20787430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 49011993 - 49011915
Alignment:
Q  235 actctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaa 312  Q
    ||||||||||| |||| ||| || ||  ||||| |||||||||||||| | ||||||||| ||| ||||||||||||||    
T  49011993 actctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaa 49011915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 33266956 - 33266887
Alignment:
Q  209 gtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    ||||||||| ||||||| |  || ||||||||||| | |||| ||| || ||||||||||||||||||||    
T  33266956 gtcttgttatcgagtgtttctagagtactctttaaagatttttaataaagaaattattctttaaaaaagt 33266887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 46521467 - 46521544
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtt 279  Q
    |||| |||||||||||||||||| | | || | ||||||||||| ||   ||| || |||||||||||||||||||||    
T  46521467 tttaagggtcttgttaacgagtgcccttagagcactctttaaggattcctaataaataaattattctttaaaaaagtt 46521544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 44920178 - 44920300
Alignment:
Q  199 tattttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgat 297  Q
    |||| |||||||||||||||||||||| || |||| | |||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||    
T  44920178 tattatatgggtcttgttaacgagtgttttaagggcattctttaaggtttctcaattaagaaattattcattaaaaaagtttaacacttcaatttatgat 44920277  T
Q  298 acattaaatgcacaattttccat 320  Q
     |||| |||||||||||||||||    
T  44920278 gcattgaatgcacaattttccat 44920300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 14758527 - 14758637
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaa 305  Q
    |||||||||||||||||||| | |||| ||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||| |||| ||    
T  14758527 gggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattattccttaaaaaagtttaacatttcaattttcgatgcattgaa 14758626  T
Q  306 tgcacaatttt 316  Q
    |||||||||||    
T  14758627 tgcacaatttt 14758637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 207 - 315
Target Start/End: Complemental strand, 13792135 - 13792026
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatt-ttgatacattaaa 305  Q
    |||||||| ||||||||||| | | |  |||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||| ||||| |||| ||    
T  13792135 gggtcttgctaacgagtgtccttaagacactctttaaggttttttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgcatttaa 13792036  T
Q  306 tgcacaattt 315  Q
    ||||||||||    
T  13792035 tgcacaattt 13792026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 8462853 - 8462944
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    |||| |||||| ||||||||||||||| || | |||||||||| |||||||| |||||||||||| ||| ||||||||||||| ||||||||    
T  8462853 tttaagggtctcgttaacgagtgtctttagagcactctttaagatttttcaactaaaaaattattatttgaaaaagtttaacacttcaattt 8462944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 30529360 - 30529436
Alignment:
Q  245 gtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttccat 320  Q
    ||||||||||||| |||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||||||||||    
T  30529360 gtttttcaattaagaaattattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaattttccat 30529436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 41649854 - 41649940
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||||||||||| |||| ||| ||   ||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  41649854 gggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaattt 41649940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 35508361 - 35508444
Alignment:
Q  210 tcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||||||||||||| | ||| |  |||||||| ||||| |||||||| |||||||||||| ||||| ||||||| ||||||||    
T  35508361 tcttgttaacgagtgccctgatgacactctttatggtttctcaattaagaaattattctttgaaaaaatttaacacttcaattt 35508444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 3483002 - 3483079
Alignment:
Q  201 ttttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    ||||||||||||| |||||||||||| | ||||  |||||||||| |||  ||| || ||||||||||||||||||||    
T  3483002 ttttatgggtcttattaacgagtgtcataagggcgctctttaaggatttctaataaagaaattattctttaaaaaagt 3483079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 51681631 - 51681694
Alignment:
Q  230 agggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    |||| ||||||||||||||  ||||||| |||||||||||| ||||||||||||| || |||||    
T  51681631 agggcactctttaaggtttcccaattaagaaattattctttgaaaaagtttaacactttaattt 51681694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 45925459 - 45925532
Alignment:
Q  206 tgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaa-aaaattattctttaaaaaagt 278  Q
    ||||||||||||||||||||| | |||  ||||||||||| || | ||| || |||||||||||||||||||||    
T  45925459 tgggtcttgttaacgagtgtcctaaggacactctttaaggattcttaataaagaaaattattctttaaaaaagt 45925532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 31500021 - 31499939
Alignment:
Q  205 atgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacattt 287  Q
    |||||||||| ||||| ||||  | || | ||||||||||| |||||| ||| ||||||||||  |||||||||| |||||||    
T  31500021 atgggtcttgctaacgggtgttctaagcgaactctttaaggattttcagttagaaaattattcactaaaaaagttaaacattt 31499939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 40053251 - 40053281
Alignment:
Q  197 attattttatgggtcttgttaacgagtgtct 227  Q
    |||||||||||||||||||||||||||||||    
T  40053251 attattttatgggtcttgttaacgagtgtct 40053281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 5423854 - 5423797
Alignment:
Q  237 tctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    ||||||||  |||| ||||| |||||||||||||||||||||| || | |||||||||    
T  5423854 tctttaagcattttaaattagaaaattattctttaaaaaagttaaatagttcaatttt 5423797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 43512747 - 43512816
Alignment:
Q  209 gtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||||||||||||||   ||||||||||| ||    |||||  |||||||||||||||||||    
T  43512747 gtcttgttaacgagtgtcttgagaacactctttaaggattccatattaattaattattctttaaaaaagt 43512816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 4521092 - 4521060
Alignment:
Q  261 attattctttaaaaaagtttaacatttcaattt 293  Q
    ||||||||||||||||||| |||||||||||||    
T  4521092 attattctttaaaaaagttaaacatttcaattt 4521060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 320
Target Start/End: Complemental strand, 248607 - 248485
Alignment:
Q  200 attttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaatta-ttctttaaaaaagtttaacatttcaattt-tgat 297  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||  |||    
T  248607 attttaagggtcttgttaacgagtgtcttaagggcactctttaaggtttctcaattaagaaattatttctttaaaaaagtttaacacttcaatttccgat 248508  T
Q  298 acattaaatgcacaattttccat 320  Q
      ||| |||||||||||||||||    
T  248507 gtattgaatgcacaattttccat 248485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 20125795 - 20125682
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gataca 300  Q
    ||||||||||||||||||||||||||| | || ||| ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||| ||| ||    
T  20125795 tttatgggtcttgttaacgagtgtcttaaaggcact-tttaaagtttttcaattaagaa-ttattctttaaaaaagtttaacacttcaattttcgatgca 20125698  T
Q  301 ttaaatgcacaatttt 316  Q
     |||||||||||||||    
T  20125697 ctaaatgcacaatttt 20125682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 4857266 - 4857329
Alignment:
Q  245 gtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatg 307  Q
    ||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||| ||||    
T  4857266 gtttttcaattaagaaattattctttgaaaaagtttaacattttaattttcgatacattgaatg 4857329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 34032234 - 34032142
Alignment:
Q  201 ttttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||| |||||||||||||||||||| |  ||| ||||||||||  || | || |||  |||||||||||||||||||| || ||||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaattt 34032142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 42877213 - 42877299
Alignment:
Q  208 ggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    ||||||| ||||||||||  | |||  ||||||||| |||| |||||| | ||||||||| | |||||||||||| |||||||||||    
T  42877213 ggtcttgctaacgagtgttctaaggacactctttaaagtttctcaattgagaaattattcatgaaaaaagtttaaaatttcaatttt 42877299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 13978773 - 13978684
Alignment:
Q  204 tatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||||||||||||||||||||| | | || ||| ||||||| ||| |||| || ||||||||  ||||||||||| || | ||||||||    
T  13978773 tatgggtcttgttaacgagtgtcctaaaggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaattt 13978684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 14116477 - 14116590
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaa 305  Q
    |||||||| |||||| |||| | ||| |||||||||||| ||||||||||| ||| ||||  |||||||||| |||   |  |||||| |||| ||||||    
T  14116477 gggtcttgctaacgaatgtcctaaggttactctttaaggattttcaattaagaaactatttattaaaaaagtctaatgctctaattttcgataaattaaa 14116576  T
Q  306 tgcacaattttcca 319  Q
    ||||||| ||||||    
T  14116577 tgcacaaatttcca 14116590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 42265415 - 42265491
Alignment:
Q  218 acgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    ||||||||| | || | ||||||||||| || | ||| |||||||||||||||||||||||  || |||||||||||    
T  42265415 acgagtgtcctaagagcactctttaaggattcttaataaaaaaattattctttaaaaaagtcaaaaatttcaatttt 42265491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 8208147 - 8208218
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    ||||||||||||||||||| || || | ||||||||||  |||| ||||  ||||||||||||| |||||||    
T  8208147 gggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagt 8208218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 25767660 - 25767595
Alignment:
Q  210 tcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaa 275  Q
    |||||||||||||||| |  ||| ||||||||||| ||||| ||||||| |||  |||||||||||    
T  25767660 tcttgttaacgagtgtttccaggatactctttaagctttttaaattaaataatatttctttaaaaa 25767595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 27146836 - 27146912
Alignment:
Q  203 ttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtt 279  Q
    |||||||| ||||||||||||  | | | || ||||||||||| |||  ||| || |||||||||||||||||||||    
T  27146836 ttatgggttttgttaacgagtcccctaaaggcactctttaaggatttctaataaagaaattattctttaaaaaagtt 27146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 43238256 - 43238165
Alignment:
Q  230 agggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaattttccat 320  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||| ||||||||| | ||||||||||    
T  43238256 agggtactctttaaggtttttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccat 43238165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 20142577 - 20142463
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaa 305  Q
    |||||||||||||||||||| | |||  |||||||||||| |||||||||| |||||||| ||| ||||||||||||| || |||||| ||| |||||||    
T  20142577 gggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaa 20142478  T
Q  306 tgcacaattttccat 320  Q
    |||||||||| ||||    
T  20142477 tgcacaatttcccat 20142463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 14237125 - 14237210
Alignment:
Q  236 ctctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttccat 320  Q
    ||||||||| ||||||||||||||||||||||  || |||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  14237125 ctctttaagatttttcaattaaaaaattattccatataaaagtttaacacttcaatttccgatgcattaaatgcacaattttccat 14237210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 23984252 - 23984332
Alignment:
Q  237 tctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaa-ttttgatacattaaatgcacaatttt 316  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||| |||||||||| | || ||||||||||    
T  23984252 tctttaaagtttttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttt 23984332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 33286035 - 33285953
Alignment:
Q  235 actctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaatttt 316  Q
    |||||||||||||| |||||||| |||||||| ||| ||||| ||||||||||||||||| |||  ||||||| |||||||||    
T  33286035 actctttaaggtttatcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttt 33285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 14855722 - 14855636
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    |||||||| | ||||||||| | |||  ||| ||||||||||  | |||||||||||||||||| ||||||||||||| ||||||||    
T  14855722 gggtcttgctgacgagtgtcctaaggacactttttaaggtttccctattaaaaaattattctttgaaaaagtttaacacttcaattt 14855636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 44254265 - 44254194
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||||||||||| | |||| ||||||||||| |||  ||| || ||||| ||| ||||||||||    
T  44254265 gggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagt 44254194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 4166463 - 4166577
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaa 305  Q
    |||| |||||||||||| || | |||| ||||||||||| ||   ||| || ||||||||| || |||||||| || ||||||||||   ||||||| ||    
T  4166463 gggttttgttaacgagtttcctaagggcactctttaaggattcataatcaagaaattattcattgaaaaagttcaatatttcaatttccaatacattgaa 4166562  T
Q  306 tgcacaattttccat 320  Q
    ||||||| |||||||    
T  4166563 tgcacaagtttccat 4166577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 12787817 - 12787875
Alignment:
Q  208 ggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattatt 266  Q
    ||||||||||||||||||||| ||  |||||||||||  || | |||||||||||||||    
T  12787817 ggtcttgttaacgagtgtcttaagaatactctttaagaattctaaattaaaaaattatt 12787875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 29487195 - 29487123
Alignment:
Q  210 tcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaa 282  Q
    |||||||||||||||| |  |||| ||||||| |   || | |||||| ||||||||||||||||||||||||    
T  29487195 tcttgttaacgagtgtttccagggcactcttttaatattctaaattaagaaattattctttaaaaaagtttaa 29487123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 42022704 - 42022660
Alignment:
Q  234 tactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||  |||| ||||||||||||||| |||||||||||    
T  42022704 tactctttaagcattttaaattaaaaaattattttttaaaaaagt 42022660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 44319993 - 44319879
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaa 305  Q
    |||||||||||||||||||| | |||  |||||||||||| |||||||||| |||||||| ||| ||||||||||||| || |||||| ||| |||||||    
T  44319993 gggtcttgttaacgagtgtcctaaggacactctttaaggtatttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgcattaaa 44319894  T
Q  306 tgcacaattttccat 320  Q
    |||||||||| ||||    
T  44319893 tgcacaatttcccat 44319879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 6771805 - 6771919
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaa 305  Q
    ||||||| |||||||||||| | | |  |||||||||||||| |||||||| |||||||||||| |||||  | | |||||||||||  |||| ||| ||    
T  6771805 gggtcttcttaacgagtgtccttaagacactctttaaggtttctcaattaagaaattattctttgaaaaaactcaccatttcaatttccgatatattgaa 6771904  T
Q  306 tgcacaattttccat 320  Q
    |||||||||||||||    
T  6771905 tgcacaattttccat 6771919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 6775199 - 6775313
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaa 305  Q
    |||||||||||| ||||||| | |||| |||||||||||||| |||||||| |||||||||||| |||||  | |  |||| |||||  ||| |||| ||    
T  6775199 gggtcttgttaaggagtgtccttagggcactctttaaggtttctcaattaataaattattctttgaaaaatctcactatttgaatttccgatgcattgaa 6775298  T
Q  306 tgcacaattttccat 320  Q
    |||||||||||||||    
T  6775299 tgcacaattttccat 6775313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 5496081 - 5495994
Alignment:
Q  234 tactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaattttccat 320  Q
    ||||||||||||||| |||||||| ||||||||| || |||| |||||||| || |||||| ||| |||| ||||||||| |||||||    
T  5496081 tactctttaaggtttctcaattaagaaattattccttgaaaatgtttaacactttaattttcgatgcattgaatgcacaactttccat 5495994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 43211093 - 43210991
Alignment:
Q  210 tcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattttgatacattaaatgca 309  Q
    ||||||||||||||||| | |||| |||||||||| |||||||||||||||| ||||  |  ||||||||||| | || ||||   || |||||||||||    
T  43211093 tcttgttaacgagtgtcctaagggcactctttaagatttttcaattaaaaaactatttatctaaaaagtttaatactttaattccaatgcattaaatgca 43210994  T
Q  310 caa 312  Q
    |||    
T  43210993 caa 43210991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 26200 - 26283
Alignment:
Q  237 tctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaattttccat 320  Q
    ||||||||||||| ||||||| ||||||||||||  |||||||||||| || |||||| ||| ||||||||| ||||||| ||||    
T  26200 tctttaaggtttt-caattaagaaattattctttgcaaaagtttaacactttaattttcgatgcattaaatgtacaatttcccat 26283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 17883451 - 17883380
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||| ||||||||||||| | |||| ||||||||||| |||| ||| || |||||||| |||||||||||    
T  17883451 gggtctagttaacgagtgtcctaagggcactctttaaggatttttaataaagaaattattttttaaaaaagt 17883380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 49682167 - 49682246
Alignment:
Q  239 tttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttc 317  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||  |||| ||||||||||||||    
T  49682167 tttaaggtttttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttc 49682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 3973775 - 3973895
Alignment:
Q  201 ttttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatac 299  Q
    ||||||| ||||||||||| |||| | | || | ||||||||||||||  ||||||| ||||||||| ||||||||||| |||  ||||||||  ||| |    
T  3973775 ttttatgtgtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgc 3973874  T
Q  300 attaaatgcacaattttccat 320  Q
    |||||||||||||||||||||    
T  3973875 attaaatgcacaattttccat 3973895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 4009630 - 4009511
Alignment:
Q  201 ttttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatac 299  Q
    ||||||| ||||||||||| |||| | | || | ||||||||||||||  ||||||| ||||||||| ||||||||||| |||  ||||||||  ||| |    
T  4009630 ttttatgtgtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattattccttaaaaaagttcaacgcttcaatttccgatgc 4009531  T
Q  300 attaaatgcacaattttcca 319  Q
    ||||||||||||||||||||    
T  4009530 attaaatgcacaattttcca 4009511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 3996102 - 3995982
Alignment:
Q  201 ttttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatac 299  Q
    ||||||| ||||||||||| |||| | | || | ||||||||||||||  |||||||  |||||||| ||||||||||| |||  ||||||||  ||| |    
T  3996102 ttttatgtgtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagcaattattccttaaaaaagttcaacgcttcaatttccgatgc 3996003  T
Q  300 attaaatgcacaattttccat 320  Q
    |||||||||||||||||||||    
T  3996002 attaaatgcacaattttccat 3995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 11465767 - 11465692
Alignment:
Q  203 ttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    ||||| |||||||||||||||||| | ||   ||||||||||| |||| ||| |||||||||||||||||||||||    
T  11465767 ttatgagtcttgttaacgagtgtcctaagaacactctttaaggatttttaataaaaaaattattctttaaaaaagt 11465692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 29484975 - 29484887
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttc-aattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    |||||||||||||||||||| | |||||| | ||| | | ||||| |||||| |||||||||||||||||| | ||||| |||||||||    
T  29484975 gggtcttgttaacgagtgtcattagggtatttttttaagattttctaattaagaaattattctttaaaaaaatctaacacttcaatttt 29484887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 34285330 - 34285402
Alignment:
Q  219 cgagtgtcttgagggtactctttaaggtttttcaattaaaaaat-tattctttaaaaaagtttaacatttcaa 290  Q
    |||||||| | |||| ||||||||||| ||  |||||||||||| |||||||||||||||||||||| |||||    
T  34285330 cgagtgtccttagggcactctttaaggcttcccaattaaaaaatatattctttaaaaaagtttaacacttcaa 34285402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 32606492 - 32606434
Alignment:
Q  235 actctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||| |||||||||||||||||||||||||  ||| |||||  |||||||||||||||    
T  32606492 actctataaggtttttcaattaaaaaattatattttgaaaaaagttaacatttcaattt 32606434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 320
Target Start/End: Complemental strand, 21813297 - 21813180
Alignment:
Q  200 attttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaaca-tttcaattttgata 298  Q
    ||||| ||||| |||||||||||| |||| |||| ||| ||    |||| |||||||| ||||||||| || ||||||||||||| ||| ||||  |||     
T  21813297 attttttgggttttgttaacgagtctcttcagggcactttt----gtttctcaattaagaaattattcattgaaaaagtttaacactttaaattccgatg 21813202  T
Q  299 cattaaatgcacaattttccat 320  Q
    |||| |||||| ||||||||||    
T  21813201 cattgaatgcataattttccat 21813180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 31294370 - 31294424
Alignment:
Q  239 tttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    |||||||||||  |||||| |||||||||||| ||||||||||||| || |||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaattt 31294424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 50368543 - 50368473
Alignment:
Q  208 ggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    ||||| ||||||||||||||| |||| | ||||||| | |||| || |||  |||||||||||||||||||    
T  50368543 ggtctcgttaacgagtgtctttagggcattctttaaagattttaaaataagtaattattctttaaaaaagt 50368473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 24313514 - 24313587
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaa 275  Q
    ||||||| ||||||||||||||||| |  ||| |||||||||   || | ||||||| ||||||||||||||||    
T  24313514 tttatggatcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaa 24313587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 11692728 - 11692772
Alignment:
Q  234 tactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||  | || |||||||||||||||||||||||||||    
T  11692728 tactctttaagcatattaaattaaaaaattattctttaaaaaagt 11692772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 18734325 - 18734430
Alignment:
Q  212 ttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcac 310  Q
    ||||||| ||||||| | | || ||||| |||||||| |||||||| ||||||||| |||||||||||||||| ||||||||  |||||||| |||||||    
T  18734325 ttgttaatgagtgtcctaaaggcactctctaaggtttctcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcac 18734424  T
Q  311 aatttt 316  Q
    ||||||    
T  18734425 aatttt 18734430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 32438188 - 32438106
Alignment:
Q  239 tttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttccat 320  Q
    ||||||||||| |||||||||||||||| ||| |||| |||||||| ||||||||  ||| ||||||||||||||||||||||    
T  32438188 tttaaggttttccaattaaaaaattattatttgaaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccat 32438106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 33963053 - 33962971
Alignment:
Q  235 actctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt-gatacattaaatgcacaatttt 316  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||  || |||| |||||||||||||    
T  33963053 actctttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttt 33962971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 18375029 - 18375101
Alignment:
Q  206 tgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||||||||| || | |||||||||||||||| ||   ||| || ||||||||||||||||||||    
T  18375029 tgggtcttgttaacgagtatcctaagggtactctttaaggattcctaataaagaaattattctttaaaaaagt 18375101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 37597460 - 37597524
Alignment:
Q  212 ttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaa 276  Q
    |||||||||||||  || |||| ||||||||||||||  ||||||| ||||| |||||| |||||    
T  37597460 ttgttaacgagtgctttaagggcactctttaaggtttcccaattaagaaattgttctttgaaaaa 37597524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 122580 - 122489
Alignment:
Q  230 agggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacattaaatgcacaattttccat 320  Q
    |||| |||||||||| ||| |||||||| |||||||||||| ||||||||||||| || |||||  ||| ||||||||||||||||||||||    
T  122580 agggcactctttaagatttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccat 122489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 5142 - 5056
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt 293  Q
    ||||||||||||| |||| ||| ||   ||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||    
T  5142 gggtcttgttaacaagtgccttaagaacactttttaaggtttcccaattaaaaaattattccttaaaaaagtttaacatttcaattt 5056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 29988470 - 29988380
Alignment:
Q  202 tttatgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    ||||| ||| ||| ||||||||||||| |  |||||||||||||||| |||||||| |||||||||||||||||||| ||  |||||||||||    
T  29988470 tttataggttttgctaacgagtgtcttaacagtactctttaaggtttctcaattaagaaattattctttaaaaaagtata--atttcaatttt 29988380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 29407971 - 29408042
Alignment:
Q  207 gggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagt 278  Q
    |||||||||||||||||| ||| |||| ||||||||||| ||   ||| || ||||||||||||||||||||    
T  29407971 gggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattattctttaaaaaagt 29408042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 26295554 - 26295662
Alignment:
Q  205 atgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaattt-tgatacatta 303  Q
    |||||||||| |||||||| |||  ||| ||||||||||||||| | |||||| ||| |||||||| ||||| ||||||| || |||||  ||||||||     
T  26295554 atgggtcttgctaacgagtatctaaaggatactctttaaggtttcttaattaagaaactattctttgaaaaa-tttaacactttaatttcagatacattg 26295652  T
Q  304 aatgcacaat 313  Q
    |||| |||||    
T  26295653 aatgtacaat 26295662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 17124622 - 17124681
Alignment:
Q  216 taacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaaaa 275  Q
    |||| ||||||||||||  |||| |||||| |||| ||| ||||||||||||||||||||    
T  17124622 taacaagtgtcttgaggacactcattaaggatttttaatgaaaaaattattctttaaaaa 17124681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 7340638 - 7340700
Alignment:
Q  247 ttttcaattaaaaaattattctttaaaaaagtttaacatttcaattttgatacattaaatgca 309  Q
    ||||||||||||||||||||| || ||||||| ||| | || | ||||||| |||||||||||    
T  7340638 ttttcaattaaaaaattattcattgaaaaagtataatacttaatttttgatgcattaaatgca 7340700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 5678586 - 5678522
Alignment:
Q  230 agggtactctttaaggtttttcaattaaaaaattattctttaaaaaagtttaacatttcaatttt 294  Q
    |||||||||||||||| ||   | |||| ||||||||| |||||||||||||| | |||||||||    
T  5678586 agggtactctttaaggattcatagttaagaaattattcattaaaaaagtttaatacttcaatttt 5678522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 62666 - 62626
Alignment:
Q  204 tatgggtcttgttaacgagtgtcttgagggtactctttaag 244  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  62666 tatgggtcttgttaacgagtgtctccagggtactctttaag 62626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 21268 - 21335
Alignment:
Q  206 tgggtcttgttaacgagtgtcttgagggtactctttaaggtttttcaattaaaaaattattctttaaa 273  Q
    ||||| ||||||||||||||| | | |  ||||||||||||||| ||||||| ||||||||| |||||    
T  21268 tgggttttgttaacgagtgtcctaatgacactctttaaggttttccaattaagaaattattccttaaa 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University