View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_16 (Length: 405)
Name: NF19516_high_16
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 54160290 - 54160114
Alignment:
| Q |
54 |
ttttcattcctccagactgggattttgcaacctgaagaacttgcagaattgttttctactgccccggaaaggtagattgttttcacagattttttgctgc |
153 |
Q |
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| T |
54160290 |
ttttcattactccagaatgggattttgcaacctgaagaacttgaagaattgttttttactgccccagaaaggtagattgctttctcacattttttgctac |
54160191 |
T |
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| Q |
154 |
actttttgtttactttattatcctccatttcatggtggattagtttgaattcttaatttggtagtggggcagtttga |
230 |
Q |
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| T |
54160190 |
actttttgtttactttattatccaccatttcatggtggattagtttgaattcttactttggtaatggggcagtttga |
54160114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 54159858 - 54159757
Alignment:
| Q |
304 |
tggaattacaggactatcacttgatgcatttttgtcaaaggtgctcaagtcttttaccttggtctctattccctctttcttgaattttactgaacaatgt |
403 |
Q |
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| T |
54159858 |
tggaattacaggactatcacttgaagcatttttgtcaaaggtgctcaagcctttcaccttggtctctgttccctcgtccttgaattttactgaacaatgt |
54159759 |
T |
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| Q |
404 |
tt |
405 |
Q |
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|| |
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| T |
54159758 |
tt |
54159757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 53867076 - 53867198
Alignment:
| Q |
77 |
tttgcaacctgaagaacttgcagaattgttttctactgccccggaaaggtagattgttttcacagattttttgctgcactttttgtttactttattatcc |
176 |
Q |
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| T |
53867076 |
tttgcaacctgaagaacttaaagaattgttttctactgccccggaaaggtagattgctttctcacattttttgctatacttatt-ttcactttattatca |
53867174 |
T |
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| Q |
177 |
tccatttcatggtggattagtttg |
200 |
Q |
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| T |
53867175 |
tccatttcatgcttgattaatttg |
53867198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 53867464 - 53867554
Alignment:
| Q |
313 |
aggactatcacttgatgcatttttgtcaaaggtgctcaagtcttttaccttggtctctattccctctttcttgaattttactgaacaatgt |
403 |
Q |
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| T |
53867464 |
aggactatcacttgatgcatttttgtcaaaggtgctcgagtttttttccttagtctctattccctcttcctcgcattttgttgaacaatgt |
53867554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 54159982 - 54159908
Alignment:
| Q |
233 |
cctttcctgaatctggatgtctgtgaggaccttagacatattaatattttatgatttttaatttcagtccctgga |
307 |
Q |
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| T |
54159982 |
cctttcctgaatcttgatgtcagtgaggactctagccatattgatattttatgatttttaatttcagtccctgga |
54159908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 14774636 - 14774579
Alignment:
| Q |
313 |
aggactatcacttgatgcatttttgtcaaaggtgctcaagtcttttaccttggtctct |
370 |
Q |
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| T |
14774636 |
aggactatcacttgatgcatttttgtcagaggtgcacaagtcttttatctttgtctct |
14774579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 15049779 - 15049737
Alignment:
| Q |
90 |
gaacttgcagaattgttttctactgccccggaaaggtagattg |
132 |
Q |
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| T |
15049779 |
gaacttgaagaactgttttctactgctccggaaaggtagattg |
15049737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 36874857 - 36874899
Alignment:
| Q |
90 |
gaacttgcagaattgttttctactgccccggaaaggtagattg |
132 |
Q |
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| T |
36874857 |
gaacttgaagaattgttttccactgccccggaaaggtagattg |
36874899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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