View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_18 (Length: 276)
Name: NF19516_high_18
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 36354447 - 36354192
Alignment:
| Q |
11 |
cacagacacaaaccgaaactaatgcattctagttgnnnnnnncatccttgattttctcttcttcacacgttttggtcgacctcgac----agcattgtgg |
106 |
Q |
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| T |
36354447 |
cacagacacaaaccgaaactaatgcattctagttgtttttttcatccttgattttctcttcttcacacgttttggtcgacctcgacgtacagcattgtgg |
36354348 |
T |
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| Q |
107 |
catcttcctattggacaaca-tttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagataca |
205 |
Q |
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| T |
36354347 |
catcctcctattggacaacactttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagataca |
36354248 |
T |
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| Q |
206 |
acaatagctactatttctgggaatatttttctttcccagttcatctttgtttattc |
261 |
Q |
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| T |
36354247 |
acaatagctactatttctgggaatatttttctttcccagttcatctttgtttattc |
36354192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 36355557 - 36355482
Alignment:
| Q |
182 |
tttccatatctatggcaagatacaacaatagctactatttctgggaatatttttctttcccagttcatctttgttt |
257 |
Q |
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| T |
36355557 |
tttccatatctatggccagatacaacaatagctactactcttgggaaaatttctctatcccaattcatctttgttt |
36355482 |
T |
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