View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19516_high_3 (Length: 623)

Name: NF19516_high_3
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19516_high_3
NF19516_high_3
[»] chr4 (5 HSPs)
chr4 (393-617)||(44163828-44164051)
chr4 (132-328)||(44163571-44163764)
chr4 (18-137)||(44163383-44163502)
chr4 (566-608)||(17669447-17669489)
chr4 (566-617)||(19819950-19819999)
[»] chr8 (1 HSPs)
chr8 (562-604)||(41779887-41779929)
[»] chr7 (3 HSPs)
chr7 (565-617)||(45291425-45291475)
chr7 (564-608)||(11826388-11826432)
chr7 (566-617)||(45288089-45288138)
[»] chr5 (1 HSPs)
chr5 (565-606)||(21336702-21336743)
[»] chr1 (1 HSPs)
chr1 (566-603)||(49147113-49147150)
[»] scaffold0757 (1 HSPs)
scaffold0757 (566-617)||(4563-4612)
[»] chr6 (1 HSPs)
chr6 (568-604)||(9840321-9840357)
[»] chr3 (4 HSPs)
chr3 (564-608)||(2280737-2280781)
chr3 (566-617)||(3839790-3839842)
chr3 (566-617)||(53814971-53815020)
chr3 (566-617)||(54460367-54460416)
[»] chr2 (1 HSPs)
chr2 (565-605)||(1507481-1507521)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 393 - 617
Target Start/End: Original strand, 44163828 - 44164051
Alignment:
Q  393 atcaattgatgttatctgtatgctccaaacattactgcccgtgaactaccatttgaattctgttgttgagaatttgtttatctcttcaactaatattatt 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  44163828 atcaattgatgttatctgtatgctccaaacattactgcccgtgaactaccatttgaattctggtgttgagaatttgtttatctcaacaactaatattatt 44163927  T
Q  493 atgtttcttattatgatggtagtcaattaatttctgccgacgtttacattatattttcatattagctgatcgatgatgacagccaatcattcactatttt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||    
T  44163928 atgtttcttattatgatggtagtcaattaatttctgccgacgtttacattatattttcatattagtttatcgatgatgacagtcagtcattcactatttt 44164027  T
Q  593 taaagtcttttttaatgatattttt 617  Q
    ||||||||||||| |||||||||||    
T  44164028 taaagtctttttt-atgatattttt 44164051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 132 - 328
Target Start/End: Original strand, 44163571 - 44163764
Alignment:
Q  132 acacaaaataaaggttgtgcgaattagttctgttctttctgttgtcagtttgtgaagttcaacatttgtaaataactagatcgtattaattaaattgtag 231  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44163571 acacaaaataaaggttgtgcgaattagttttgttctttgtgttgtcagtttgtgaagttcaacatttgtaaataactagatcgtattaattaaattgtag 44163670  T
Q  232 gattggagcgaggaatttgatgctgatcttggcaatactattgtgaatcttctgaatgataaaccagaagaggtggtatattgttaatctgaactaa 328  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||    
T  44163671 gattggagcgaggaatttgatgctgatcttggcaacactattgtgaatcttctgaatgataaacaagaaga---ggtatattgttaatctgaactaa 44163764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 44163383 - 44163502
Alignment:
Q  18 cgttgtgttgtttatattgcagagtaaggattcagtgacttatcctccggagctggatacattggtttggaaactaatgctttttaaagttgagctaact 117  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44163383 cgttgtgttgtttatattgtagagtagggattcagtgacttatcctccggagctggatacattggtttggaaactaatgctttttaaagttgagctaact 44163482  T
Q  118 gatgggaatttggcacacaa 137  Q
    ||||||||||||||||||||    
T  44163483 gatgggaatttggcacacaa 44163502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 608
Target Start/End: Original strand, 17669447 - 17669489
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaat 608  Q
    ||||||||| || ||||||||||||||||||||| ||||||||    
T  17669447 tgatgacagtcagtcattcactatttttaaagtcatttttaat 17669489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 19819950 - 19819999
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    ||||||||| || |||||| |||||||||||||||||||  |||||||||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtcttttt--atgatattttt 19819999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 562 - 604
Target Start/End: Complemental strand, 41779929 - 41779887
Alignment:
Q  562 tcgatgatgacagccaatcattcactatttttaaagtcttttt 604  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  41779929 tcgatgatgacagacagtcattcactatttttaaagtcttttt 41779887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 617
Target Start/End: Complemental strand, 45291475 - 45291425
Alignment:
Q  565 atgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    |||||||||| || |||||||||||||||| |||||||||  |||||||||||    
T  45291475 atgatgacagtcagtcattcactatttttagagtcttttt--atgatattttt 45291425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 11826432 - 11826388
Alignment:
Q  564 gatgatgacagccaatcattcactatttttaaagtcttttttaat 608  Q
    ||||||||||| || |||| ||||||||||| |||||||||||||    
T  11826432 gatgatgacagtcagtcatgcactatttttagagtcttttttaat 11826388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Complemental strand, 45288138 - 45288089
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    ||||||||| || |||||||||||||||| |||||||||  |||||||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtcttttt--atgatattttt 45288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Complemental strand, 21336743 - 21336702
Alignment:
Q  565 atgatgacagccaatcattcactatttttaaagtctttttta 606  Q
    |||||||||| || |||||||||||||||| |||||||||||    
T  21336743 atgatgacagtcagtcattcactatttttagagtctttttta 21336702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 49147113 - 49147150
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtctttt 603  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  49147113 tgatgacagtcaatcattcactatttttagagtctttt 49147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 4563 - 4612
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    ||||||||| || |||||||||||||||| |||||||||  |||||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtcttttt--atgatattttt 4612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 604
Target Start/End: Complemental strand, 9840357 - 9840321
Alignment:
Q  568 atgacagccaatcattcactatttttaaagtcttttt 604  Q
    |||||||||| |||||||||||||||| |||||||||    
T  9840357 atgacagccagtcattcactatttttagagtcttttt 9840321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 2280781 - 2280737
Alignment:
Q  564 gatgatgacagccaatcattcactatttttaaagtcttttttaat 608  Q
    ||||||||||| || |||| ||||||||||| |||||||||||||    
T  2280781 gatgatgacagtcagtcatgcactatttttagagtcttttttaat 2280737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 3839790 - 3839842
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaag-tcttttttaatgatattttt 617  Q
    ||||||||| || |||||||||||||||| || | ||||||||||||||||||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatattttt 3839842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 53814971 - 53815020
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    ||||||||| || |||||||||||||||| |||||||||  |||||||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtcttttt--atgatattttt 53815020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 54460367 - 54460416
Alignment:
Q  566 tgatgacagccaatcattcactatttttaaagtcttttttaatgatattttt 617  Q
    ||||||||| || |||||||||||||||| |||||||||  |||||||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtcttttt--atgatattttt 54460416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 605
Target Start/End: Complemental strand, 1507521 - 1507481
Alignment:
Q  565 atgatgacagccaatcattcactatttttaaagtctttttt 605  Q
    |||||||||| || |||||||||||||||||||| ||||||    
T  1507521 atgatgacagtcagtcattcactatttttaaagtttttttt 1507481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University