View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_6 (Length: 578)
Name: NF19516_high_6
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Complemental strand, 1037298 - 1036809
Alignment:
| Q |
17 |
caattttatgtgtattttagttgagttttgtaaaggattgttcaaaggtcatgcaagagtataaatgggaaaataactttgaaactataacaatataccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1037298 |
caattttatgtgtattttagttgagttttgtaaaggatcgatcaaaagtcatgcaagagtataaatgggaaaataactttgaaactataaaaatataccc |
1037199 |
T |
|
| Q |
117 |
aaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatgag |
216 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
1037198 |
aaactagacaactttgtgactgtactatgcttattacaagttttgacatgttaaattttggggcatagttattatagacgtttcagtgaggataaatgag |
1037099 |
T |
|
| Q |
217 |
acaatgaataaagaaaagcataaggattagcctcgtcctgactcgtgtcccttgcaacgagccacgcaccgtgatactgatggaaagttagaagtgtttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
1037098 |
acaatgaataaagaaaagcataaggattagcctcgtcccgactcgtgtcccttccaatgagccacacaccgtgataccgatggaaagttagaagtgtttc |
1036999 |
T |
|
| Q |
317 |
gccattgcctcacccgcttcgcgagatataggaaagttcagaagtgtttcatcactatttaaatcgcattgtatactacaaagatcgtgtcgcgacagtt |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1036998 |
gccattgcctcacccgcttcgcgagatatacgaaagttcagaagtgtttcatcactatttaaatcgcatcgtatactacaaagatcgtgtcgcgacagtt |
1036899 |
T |
|
| Q |
417 |
ggaaaattaagaagagccactcgtggagaaagtcacttaatgaagaggtggagtgcaaataggaataatattgggttattgggcttattt |
506 |
Q |
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| T |
1036898 |
ggaaaattaagaagagccactcgtggagaaagtcacttaatgaagaggtggagtgcaaataggaataatattgggttattgggcttattt |
1036809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 24763546 - 24763426
Alignment:
| Q |
79 |
aaatgggaaaataactttgaaactataacaatatacccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggg |
178 |
Q |
| |
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|||||||||||| |||||||||| || ||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
24763546 |
aaatgggaaaatgactttgaaaccatggaaattcacccaaactagtcaacttcgtgaccaagatatgcttattacaagttttatcatgttaaattttggg |
24763447 |
T |
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| Q |
179 |
gcatagttattacagacgttt |
199 |
Q |
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| ||| | ||||| ||||||| |
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| T |
24763446 |
gtataatcattacggacgttt |
24763426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 4962829 - 4962783
Alignment:
| Q |
114 |
cccaaactagacaacttcgtgattgtactatgcttattacaagtttt |
160 |
Q |
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| T |
4962829 |
cccaaactagacaactttgtaactgtactatgcttattacaggtttt |
4962783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 9025937 - 9025848
Alignment:
| Q |
112 |
tacccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttca |
201 |
Q |
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|||||||||||||||||| |||||||||||||| |||| |||| |||| |||||||| |||||| ||| | ||||||||| ||||| |
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| T |
9025937 |
tacccaaactagacaactctgtgattgtactatgtttatcacaatttttatcatgttaatacttggggtataatcattacagacatttca |
9025848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 34120611 - 34120542
Alignment:
| Q |
21 |
tttatgtgtattttagttgagttttgtaaag-gattgttcaaaggtcatgcaagagtataaatgggaaaa |
89 |
Q |
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| T |
34120611 |
tttatgtgtgttttagttgagttttgtaaagaaatagttcaaaagtcatgaaagagaaaaaatgggaaaa |
34120542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 34119896 - 34119849
Alignment:
| Q |
113 |
acccaaactagacaacttcgtgattgtactatgcttattacaagtttt |
160 |
Q |
| |
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|||||||||||||||||| |||| ||||||| ||||||||||||||| |
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| T |
34119896 |
acccaaactagacaactttgtgaccgtactatacttattacaagtttt |
34119849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 16649442 - 16649305
Alignment:
| Q |
116 |
caaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatga |
215 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| |||| |||||||| | || ||| ||||| ||||| || ||| |||| | ||||| |
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| T |
16649442 |
caaactagacaacctcgtgatcatactatatttattacaatttttatcatgttaattattagggtatagtcgttacatacattttggtgataagaaatgt |
16649343 |
T |
|
| Q |
216 |
gacaatgaataaagaaaagcataaggattagcctcgtc |
253 |
Q |
| |
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|| || ||||||||||||||| |||||| | ||||||| |
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| T |
16649342 |
gataaggaataaagaaaagcaaaaggatcaacctcgtc |
16649305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 2029054 - 2029026
Alignment:
| Q |
27 |
tgtattttagttgagttttgtaaaggatt |
55 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2029054 |
tgtattttagttgagttttgtaaaggatt |
2029026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 16380421 - 16380300
Alignment:
| Q |
115 |
ccaaactagacaacttcgtgattgtactatgcttattacaagttttgacatgttaaattttggggcatagttattacagacgtttcagtgaagataaatg |
214 |
Q |
| |
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|||||| ||||||||| | | ||||||||||||| || ||||||| |||||||| | |||||| ||||| ||||| ||| |||| |||| || |||| |
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| T |
16380421 |
ccaaaccagacaactttataactgtactatgcttactataagttttagcatgttaattcttggggtatagtcattaccgacatttcggtgatgagaaata |
16380322 |
T |
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| Q |
215 |
agacaatgaataaagaaaagca |
236 |
Q |
| |
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||||| |||| |||||||||| |
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| T |
16380321 |
agacagagaatgaagaaaagca |
16380300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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