View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_8 (Length: 535)
Name: NF19516_high_8
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 10368029 - 10367505
Alignment:
| Q |
1 |
ttgagatgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttcattccttgaacaaacaaaaaacttgctcttacaaacagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
10368029 |
ttgagatgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttcattccttgaacaaacataaaacttggtcttacaaacagtt |
10367930 |
T |
|
| Q |
101 |
ccagaactaactcccccaaaatctaaaggcagactttgtatatcagtccattcgtttgttgaagaatcataaatttctccacgatacaatgactcgttct |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10367929 |
ccagaactaactcccccaaaatctaaaggaagactttgtatatcagtccattcatttgttgaagaatcataaatttctccacgatacaatgactcgttca |
10367830 |
T |
|
| Q |
201 |
cggttctttctatagcaatcaataaaaatgttcttttaaagaccgttgagcttgtcgttgaatgatcactttttctttgtccaatgaacttgtatgtcat |
300 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
10367829 |
cggttcttcctatagcaatcaataaaaatgatcttttaaagacctttgagcttgtagatgaacgatcactttttctttgtccaatgaacttgcatgtcat |
10367730 |
T |
|
| Q |
301 |
agccattttactaatgaaagatgaatacttgtaaggaataatagaatcctcaatgactcctaataaaggaagagctctagaat-tttcatagatggcata |
399 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
10367729 |
agccattttactaatgaaa-atgaatacttgcaaggaataatagaatcctcaatgactactaataaaggaagagctctcgaatatttcatagatggcata |
10367631 |
T |
|
| Q |
400 |
ttatgccatgtttttgtgacagcact-nnnnnnncaacctcattgtgttctttaattggacctactacgttgccaatacatgattttcctccaacaatga |
498 |
Q |
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| T |
10367630 |
ttatgccaagtttttgtgacagcattgaaaaaaacaacctcattgtgttctttaattggacctactactttgccaatatttgattttcctccaacaatga |
10367531 |
T |
|
| Q |
499 |
ttattccatcatgtatgctagcaaca |
524 |
Q |
| |
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|||||||||||| ||||||||||||| |
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| T |
10367530 |
ttattccatcatttatgctagcaaca |
10367505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 433 - 535
Target Start/End: Complemental strand, 10379279 - 10379177
Alignment:
| Q |
433 |
caacctcattgtgttctttaattggacctactacgttgccaatacatgattttcctccaacaatgattattccatcatgtatgctagcaacagagaacat |
532 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10379279 |
caacctcattgtgttctttaattggacctactactttgccaatatttgattttcctccaacaatgattattccatcatttatgctagcaacagagaacat |
10379180 |
T |
|
| Q |
533 |
gga |
535 |
Q |
| |
|
||| |
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|
| T |
10379179 |
gga |
10379177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 54155219 - 54155266
Alignment:
| Q |
10 |
ttgaattacaatccaaaaacctctttctatgtcatatgctgcaagctt |
57 |
Q |
| |
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||||||| ||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
54155219 |
ttgaattgcaatccagaaacctcgttctatgtcatatgctgcaagctt |
54155266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 43658080 - 43657979
Alignment:
| Q |
318 |
aagatgaatacttgtaaggaataatagaatcctcaatgactcctaataaaggaagagctctagaattttc-atagatggcatattatgccatgtttttgt |
416 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||| |||||||||| | |||||| ||||| || ||| |||||||||||||||||||||| |||||| |
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|
| T |
43658080 |
aagatgaacacttgtaaggaataacatgatcctcagtgactcctaacacgggaagatatctagcatattccatagatggcatattatgccatgattttgt |
43657981 |
T |
|
| Q |
417 |
ga |
418 |
Q |
| |
|
|| |
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|
| T |
43657980 |
ga |
43657979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 43658364 - 43658309
Alignment:
| Q |
6 |
atgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttca |
61 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||||||||| ||| ||||||||||| |
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|
| T |
43658364 |
atgtttgtattgcaatccaaaaatctttttctatgtcatacgctacaagcttttca |
43658309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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