View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_high_9 (Length: 501)
Name: NF19516_high_9
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 7949724 - 7949248
Alignment:
| Q |
19 |
gcatcacctttggatagagactgactccaagatagctaccttggccatcaagtcaccctctatagttccttggaaattaaagaatagatggaacaactgt |
118 |
Q |
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| T |
7949724 |
gcatcacctttggatagagactgactccaagatagctacgttggccatcaagtcaccctctatagttccttggaaattaaagaatagatggaacaactgt |
7949625 |
T |
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| Q |
119 |
gttggaaagcttcaatctatgcaattcatcctgtctcatatttacagagaaggaaatcactgtgctgacaaacttgcaaacttaggcttatctattgttg |
218 |
Q |
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| T |
7949624 |
gttggaaagcttcaatctatgcaattcatcttgtctcatatttacagagaagaaaatcatcgtgctgacaaacttgcaaacttaggcttatctattgctg |
7949525 |
T |
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| Q |
219 |
atttcacttggtggtcctttccttcaattgtaattagaggggacctaggtaggaacaagctaggtcttcccaactttcgattttgttaatgttcctttga |
318 |
Q |
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| T |
7949524 |
atttcactt-gtggtcctttcctccaattataattagaggggacctaggtaggaataagctaggtcttcccaactttcgattttgttaatgttcctttga |
7949426 |
T |
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| Q |
319 |
tggtttggttttgcc-ccctctcttttgtgttacactttttcatttatatattatagatgtcgcct-taggctcgtcaattat--------nnnnnnnnn |
408 |
Q |
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|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
7949425 |
gggtttggttttgccaccctctcttttgtattacaatttttcatttatatattatagatgtcgcctcaaggctcatcagttataaaaataaaataaaata |
7949326 |
T |
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| Q |
409 |
nnttattttacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccgcatttgaaaccgtctctcc |
486 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7949325 |
aattattatacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccacatttgaagccgtctctcc |
7949248 |
T |
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