View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_11 (Length: 493)
Name: NF19516_low_11
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 19576725 - 19576929
Alignment:
| Q |
13 |
catcactatacctctcatcactcaacctctcgtgcacaaattgatcggtcaacgccacacacgctaaccaaagcaattcatcggtattcctcctcagaaa |
112 |
Q |
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| T |
19576725 |
catcactatacctctcatcactcaacctctcgtgcacaaattgatcggtcaacgccacacacgctaaccaaagcaattcatcggtattcctcctcagaaa |
19576824 |
T |
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| Q |
113 |
atgagctagctcatacatcaaacaccctgaaggcttcccatgaaacgtccccaatccataatactctttcttcttcttcctatacattttcaccggatct |
212 |
Q |
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| T |
19576825 |
atgagctagctcatacatcaaacaccctgaaggcttcccatgaaacgtccccaatccataatactctttcttcttcttcctatacattttcaccggatct |
19576924 |
T |
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| Q |
213 |
tgacg |
217 |
Q |
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||||| |
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| T |
19576925 |
tgacg |
19576929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 278 - 475
Target Start/End: Original strand, 19576996 - 19577193
Alignment:
| Q |
278 |
accggattcagatgaatctgaatccgaatcagattcggagtcagagtcatcagactcagactcggaatcaatagtagttgaagcattagcaagagcagta |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
19576996 |
accggattcagatgaatctgaatccgaatcagattcggagtcagagtcatcagactcagactccgaatcaatagtggttgaagcattagcaagagcagta |
19577095 |
T |
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| Q |
378 |
agaggaaaatcaaaatcataagcgagatccgcttgtttttcatcttcttgagtaaaaagaacaacaacagaatcattctggtcactgagattatgaag |
475 |
Q |
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| T |
19577096 |
agaggaaaatcaaaatcataagcgagatccgcttgtttttcatcttcttgagtaaaaagaacaacaacagaatcattctggtcactgagattatgaag |
19577193 |
T |
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