View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_14 (Length: 425)
Name: NF19516_low_14
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 3094013 - 3093607
Alignment:
| Q |
1 |
gatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttattatgatgtattatggtatgatcaaga |
100 |
Q |
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| T |
3094013 |
gatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttattatgatgtattatggtatgatcaaga |
3093914 |
T |
|
| Q |
101 |
actctgagcaagaactaaattctgttaaattcttactagatcattgtaagcaaaatcttgaaccctacttatcaattcatcattcttctgctccgtctag |
200 |
Q |
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| T |
3093913 |
actctgagctagaactaaattctgttaaattcttactagatcattgtaagcaaaatcttgaaccctacttatcaattcatcattcttctgctccgtctag |
3093814 |
T |
|
| Q |
201 |
tagcactcgagttccgaatccttattttgataccaaacaacactttgaaactaattctatggatgcagcaagggttacacaattgatcagtgatgttagc |
300 |
Q |
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| T |
3093813 |
tagcactcgagttccgaatccttattttgataccaaacaacactttgaaactaattctatggatgcagcaagggttacacaattgatcagtggtgttagc |
3093714 |
T |
|
| Q |
301 |
aatgcaatggaagaaaaatctaacttgatggtaacacaaggactatgccattgtgaagaattattggatcttaatggtagtacaaaatttgatttaaggg |
400 |
Q |
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| T |
3093713 |
aatgcaatggaagaaaaatctaacttgatggtaacacaaggactatgccattgtgaagaattattggatcttaatggtagtacaaaatttgatttaaggg |
3093614 |
T |
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| Q |
401 |
aaaagga |
407 |
Q |
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| T |
3093613 |
aaaagga |
3093607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3104411 - 3104485
Alignment:
| Q |
1 |
gatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
75 |
Q |
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| T |
3104411 |
gatgcaatggattcaattatttttgagtcggatattcgtgcagaattccccgttcatggatgtgttggtgttatt |
3104485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 41122114 - 41122185
Alignment:
| Q |
4 |
gcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
75 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| | ||||||| |
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| T |
41122114 |
gcaatgaaatcaattatctttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttatt |
41122185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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