View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_15 (Length: 418)
Name: NF19516_low_15
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 10187521 - 10187153
Alignment:
| Q |
14 |
aggacatgatgtggaagaagcggaaggagtagctatgaaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgttgaa |
113 |
Q |
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| T |
10187521 |
aggacatgatattgaagaagcagaaggagtagctatggaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgttgaa |
10187422 |
T |
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| Q |
114 |
gacacaaacacagtggattgatgnnnnnnngaaagcattagaagcttattatagacatttttcagagatgagtttgttttactagtaaacctcagcgtac |
213 |
Q |
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| T |
10187421 |
gacacaaacacagtggattgatgtttttttgaaagcattagaagcttattatagacatttttcagagatgagtttgttttactagtcaccctcagcgtac |
10187322 |
T |
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| Q |
214 |
tatagtcaaaagacatgcattatatattattaata-ctacattataataagttaatcaaatgaacatgt----gggcataatgatgtggtttcatttgtt |
308 |
Q |
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| T |
10187321 |
tatggtcaaaagacatttattatatattaatactaactacattataataagttaatcaaatgaacatgcatgcgggcataatgatgtggtttcttttgtt |
10187222 |
T |
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| Q |
309 |
ggtcttagtcaaaatgttactatgaattttggttaacaaataatataggtagataagggaaccttccta |
377 |
Q |
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| T |
10187221 |
ggtcttagtcaaaatgttactatgaattttggtttacaaataatataggtagataagggaaccttccta |
10187153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 29 - 377
Target Start/End: Complemental strand, 10190462 - 10190104
Alignment:
| Q |
29 |
agaagcggaaggagtagctatgaaaagggtgaagaggagaagaaggaacattggtttgttatccattttttggatttgtgttgaagacacaaacacagtg |
128 |
Q |
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| T |
10190462 |
agaagcagaaggagtagctatgaaaatggtgaagaggagaagaagaaacattggtttgttattcatcttttggatttgtgttgaagacacaaacatagtg |
10190363 |
T |
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| Q |
129 |
gattgatgnnnnnnngaaagcattagaagcttattatagaca--tttttcagagatgagtttgttttactagtaaacctcagcgtactatagtcaaaaga |
226 |
Q |
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| T |
10190362 |
gattgat--ttttttgaaagcatttgaggcttataatagacatgtttttgagagatgagtttgttttactagtcaacctcggcatactatggtcaaaaga |
10190265 |
T |
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| Q |
227 |
catgcattatatattattaatactacattataataagttaatcaaatgaacatgtgggcat----------aatgatgtggtttcatttgttggtcttag |
316 |
Q |
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| T |
10190264 |
catgttttatagtatattaatatttcattataataagataatgaaatgagcatgtgggcattcacggacaaagtgatgtggtttcttttgttggtcttag |
10190165 |
T |
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| Q |
317 |
tcaaaatgttactatgaattttggttaacaaataatataggtagataagggaaccttccta |
377 |
Q |
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| T |
10190164 |
tcaaaatgtttgtatgaattttggttaacaaataatataggttgttaagggaaccttccta |
10190104 |
T |
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