View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_17 (Length: 393)
Name: NF19516_low_17
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 23 - 374
Target Start/End: Complemental strand, 28675156 - 28674805
Alignment:
| Q |
23 |
aatccccttcgacatccctatccggtgtccccggcgatggaggctcagacaattcttcatcctcagtaaaaccccagcttaaaatataacaatctctagt |
122 |
Q |
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| T |
28675156 |
aatccccttcgacatccctatccggtgtccccggcgatggaggctcagacaattcttcatcctcagtaaaaccccagcttaaaatataacaatctctggt |
28675057 |
T |
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| Q |
123 |
aacagtataaaccttagaaaccttactagttttcgaatcaacgccgaaaaacgaacctacaacagaatctctatgacctnnnnnnnnnnnnggcttatac |
222 |
Q |
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| T |
28675056 |
aacagtataaaccttagaaaccttactagttttcgaatcaacaccgaaaaacgaacctacaacagaatctctatgacctaaaaacaaaaaaggcttatac |
28674957 |
T |
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| Q |
223 |
ttaacaccaccataaaccttcttcaaacacaaaatcctcgcagttaaatccttagacgcaacaagcaagtaattagaatcactactccaatcaaaagcag |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674956 |
ttaacaccaccataaaccttcttcaaacacaaaatcctcgcagttaaatccttagacgcaacaagcaagtaattagaatcactactccaatcaaaagcag |
28674857 |
T |
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| Q |
323 |
taacctttgcatgaaaatcagcaaaagtacgaatcaattcaaacggaaaata |
374 |
Q |
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| T |
28674856 |
taacctttgcatgaaaatcagcaaaagtacgaatcaattcaaacggaaaata |
28674805 |
T |
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