View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19516_low_18 (Length: 368)

Name: NF19516_low_18
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19516_low_18
NF19516_low_18
[»] chr2 (2 HSPs)
chr2 (11-351)||(35410986-35411344)
chr2 (17-91)||(33475082-33475156)
[»] chr7 (2 HSPs)
chr7 (11-143)||(26854940-26855072)
chr7 (17-91)||(11696020-11696094)
[»] chr4 (4 HSPs)
chr4 (29-143)||(7894191-7894304)
chr4 (167-351)||(7894482-7894650)
chr4 (20-142)||(25611740-25611862)
chr4 (175-267)||(35718141-35718232)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-87)||(18089-18159)
[»] chr1 (3 HSPs)
chr1 (17-87)||(51719504-51719574)
chr1 (17-91)||(50138243-50138317)
chr1 (306-354)||(15233313-15233361)
[»] chr8 (1 HSPs)
chr8 (17-89)||(43942994-43943066)
[»] scaffold0047 (1 HSPs)
scaffold0047 (17-91)||(50484-50558)
[»] chr6 (3 HSPs)
chr6 (17-91)||(31098767-31098841)
chr6 (20-89)||(35176318-35176387)
chr6 (18-61)||(32456101-32456144)
[»] chr3 (4 HSPs)
chr3 (20-120)||(15844502-15844602)
chr3 (172-255)||(37147674-37147756)
chr3 (22-142)||(54418364-54418484)
chr3 (17-57)||(52174980-52175020)
[»] chr5 (1 HSPs)
chr5 (20-89)||(42909120-42909189)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 35411344 - 35410986
Alignment:
Q  11 taatactaaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaac 110  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||    
T  35411344 taatactagccatcgatatattattattatatttgaacggttaagatcaattattggttacttgttgccaactttttgtcaattcatttacaacaaaaac 35411245  T
Q  111 agtgaccccacttatgaatagtttataattaaagt-------------------ggcctcttagttttgatggacacttggatttaattaattaattcac 191  Q
    |||||||| || ||||||| ||||||||||||| |                   |||||||||||||||||||||||||| |||||||||||||||||||    
T  35411244 agtgaccctacctatgaattgtttataattaaactagttaatgggttttttgatggcctcttagttttgatggacacttgaatttaattaattaattcac 35411145  T
Q  192 aatttcgttttgaattttcgtctaacaaacatttattgtaatttatcctcttccattttataccctttacttacccgaaaatcaatattcaaaacaaata 291  Q
    ||||||||||||||||| |||| |||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  35411144 aatttcgttttgaattt-cgtccaacaaacattcattgaaatttatcctctttaattttataccctttacttacccgaaaatcaatattcaaaacaaata 35411046  T
Q  292 cctcagataaaataattgcagaaacaatcaaacaaagtttatcaatccagatcttgacat 351  Q
    | ||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||    
T  35411045 cttcagataaattaattgtagaaacaatcaaactaagtttatcaatccagatctggacat 35410986  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 33475156 - 33475082
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtca 91  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||  || |||||| | |||||||||||||||||    
T  33475156 taaccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgtca 33475082  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 26854940 - 26855072
Alignment:
Q  11 taatactaaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaac 110  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |||||||||| |||||||||    
T  26854940 taatactagccatagatatattattattatatttggacggttaagatcaattaccgattacctgttatcaactttttgttaattcatttacaacaaaaac 26855039  T
Q  111 agtgaccccacttatgaatagtttataattaaa 143  Q
    ||||||||||| ||||||| |||||||||||||    
T  26855040 agtgaccccacctatgaattgtttataattaaa 26855072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 11696094 - 11696020
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtca 91  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||  || |||||| | |||||||||||||||||    
T  11696094 taaccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgtca 11696020  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 7894191 - 7894304
Alignment:
Q  29 tattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaacagtgaccccacttatgaa 128  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||    
T  7894191 tattattattatatttggacggttaagattaattaccggttatctgttaccaactttttctcaattcatttacaac-aaaacactgaccccacctatgaa 7894289  T
Q  129 tagtttataattaaa 143  Q
    | || ||||||||||    
T  7894290 ttgtatataattaaa 7894304  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 351
Target Start/End: Original strand, 7894482 - 7894650
Alignment:
Q  167 acttggatttaattaattaattcacaatttcgttttgaattttcgtctaacaaacatttattgtaatttatcctcttccattttataccctttacttacc 266  Q
    |||| ||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||| |||  ||                  
T  7894482 actttgatttaattaattaattcacaatttcgttttcaattt-catccaacaaacatttattgtaatttatcctcttcaattaaatt------------- 7894567  T
Q  267 cgaaaatcaatattcaaaacaaatacctcagataaaataattgcagaaacaatcaaacaaagtttatcaatccagatcttgacat 351  Q
      |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||| |||||    
T  7894568 --aaaatcaatattgaaaacaaatacctcagataaaataattgaagaaacaatcaaacgaagtttatcaattcaggtctggacat 7894650  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 25611740 - 25611862
Alignment:
Q  20 ccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaacagtgacccc 119  Q
    ||||||| ||||||||||||||||||||||||| ||||| | |||||| ||||| ||| ||||||||||| | ||  | || |||||||||| |||||||    
T  25611740 ccattgaaatattattattatatttggacggttgagatctactactggctacctattatcaactttttgtaattttgtctacaacaaaaacaatgacccc 25611839  T
Q  120 acttatgaatagtttataattaa 142  Q
    || || |||| |||||| |||||    
T  25611840 acataggaattgtttatcattaa 25611862  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 35718141 - 35718232
Alignment:
Q  175 ttaattaattaattcacaatttcgttttgaattttcgtctaacaaacatttattgtaatttatcctcttccattttataccctttacttaccc 267  Q
    |||||||||||||| ||||| ||||||| || ||| ||| ||||||||||  ||||||||| |||||||| |||| ||||||||||| |||||    
T  35718141 ttaattaattaatttacaatgtcgttttcaacttt-gtccaacaaacattctttgtaatttgtcctcttcaatttcataccctttacctaccc 35718232  T

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Target: scaffold0027 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 18089 - 18159
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaacttttt 87  Q
    |||||||||||||||||||||||||| ||||||||| |||||||  || |||||||| |||||||||||||    
T  18089 taaccattgatatattattattatatatggacggttcagatcaaagaccggttacctattaccaacttttt 18159  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 51719504 - 51719574
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaacttttt 87  Q
    |||||||||||||||||||||||||| ||||||||| |||||||  || |||||||| |||||||||||||    
T  51719504 taaccattgatatattattattatatatggacggttcagatcaaagaccggttacctattaccaacttttt 51719574  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 50138317 - 50138243
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtca 91  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||  || |||||| | |||||||||||||||||    
T  50138317 taaccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgtca 50138243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 15233313 - 15233361
Alignment:
Q  306 attgcagaaacaatcaaacaaagtttatcaatccagatcttgacattga 354  Q
    |||||||||||||||| ||| ||||||||| || |||||| ||||||||    
T  15233313 attgcagaaacaatcacacatagtttatcagtctagatctggacattga 15233361  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43943066 - 43942994
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgt 89  Q
    |||||||||||||||||||||||||| ||||||||| |||||||  || |||||||| |||||||| ||||||    
T  43943066 taaccattgatatattattattatatatggacggttcagatcaaagaccggttacctattaccaaccttttgt 43942994  T

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Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 50484 - 50558
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtca 91  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||  || |||||| | |||||||||||||||||    
T  50484 taaccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgtca 50558  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 31098767 - 31098841
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtca 91  Q
    |||||||||||||| ||||||||||| || |||||| | |||||  ||||||||| |||||||||||||||||||    
T  31098767 taaccattgatataatattattatatatgaacggttcatatcaaaaactggttacgtgttaccaactttttgtca 31098841  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 35176318 - 35176387
Alignment:
Q  20 ccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgt 89  Q
    |||||||||||||||||||||||||||| |||||||||  ||||| ||| || ||||| |||||||||||    
T  35176318 ccattgatatattattattatatttggatggttaagatttattaccggtaacttgttatcaactttttgt 35176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 32456144 - 32456101
Alignment:
Q  18 aaccattgatatattattattatatttggacggttaagatcaat 61  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||    
T  32456144 aaccattgatatattattattaaattttgacggttgagatcaat 32456101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 15844602 - 15844502
Alignment:
Q  20 ccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaacagtgacccc 119  Q
    ||||||| ||||||||||||||||||||||||| | ||| | |||||| ||||| ||| ||||||||||| | ||  | || |||||||||| |||||||    
T  15844602 ccattgagatattattattatatttggacggttgaaatctactactggctacctattatcaactttttgtaattttgtctacaacaaaaacaatgacccc 15844503  T
Q  120 a 120  Q
    |    
T  15844502 a 15844502  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 37147756 - 37147674
Alignment:
Q  172 gatttaattaattaattcacaatttcgttttgaattttcgtctaacaaacatttattgtaatttatcctcttccattttatacc 255  Q
    ||||||||||||||||||||||||| ||||| ||  |||||| |||||||||   |||||||||||||||||| |||| |||||    
T  37147756 gatttaattaattaattcacaattttgttttcaa-cttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc 37147674  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 54418484 - 54418364
Alignment:
Q  22 attgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgtcaattcatttataacaaaaacagtgaccccac 121  Q
    ||||| ||||||||||||||||||||||||| ||||| | ||| |  ||||| ||| ||| ||||||| | ||  | || |||||||||| |||||||||    
T  54418484 attgagatattattattatatttggacggttgagatctactaccgactacctattatcaattttttgtaattttgtctacaacaaaaacaatgaccccac 54418385  T
Q  122 ttatgaatagtttataattaa 142  Q
     || |||| |||||| |||||    
T  54418384 ataggaattgtttatcattaa 54418364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 52174980 - 52175020
Alignment:
Q  17 taaccattgatatattattattatatttggacggttaagat 57  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  52174980 taaccattgatatattattattatatattgacggttcagat 52175020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 42909120 - 42909189
Alignment:
Q  20 ccattgatatattattattatatttggacggttaagatcaattactggttacctgttaccaactttttgt 89  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||  || || ||||| |||||||||||    
T  42909120 ccattgatatattattattatatttggatggttaaaatctattaccagtaacttgttatcaactttttgt 42909189  T

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