View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19516_low_2 (Length: 644)
Name: NF19516_low_2
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Complemental strand, 12601349 - 12600730
Alignment:
| Q |
11 |
cataggggaattggatttaaaatttcctctccatgcagagattacaccgtcctgtgatttaattaatcaaatttaacataaactgatagataacagaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12601349 |
cataggggaattggatttaaaatttcctctccatgcagagattacaccgtcctgtgatttaattaatcaaatttaacataaactgatagataacagaaaa |
12601250 |
T |
|
| Q |
111 |
tatcgcagaaactgatagataacagaaactgatagttacctctgctccggctaagagtgtatcatagccagcagtcattgcaaggactcgccccttaggt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
12601249 |
gatcgcagaaactgatagataacagaaactgatagttacctctgctccggctaagagtgtatcatagccagcagtcatcgcaaggactcgccccctaggt |
12601150 |
T |
|
| Q |
211 |
gcatcaagagtaaactgcgatgcagtcggaatatgccatgccttcacaaatacagcaatgacaaattcagcttataagacaagatcacacaatgaaacaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12601149 |
gcatcaagagtaaactgcgatgcagtcggaatatgccatgccttcacaaatacagcaatgacaaattcagcttataagacaagatcacacaatgaaacaa |
12601050 |
T |
|
| Q |
311 |
aacaataactgacgtaagaataaaagcacttaccttgaccgtgtttggcagaccaacaaaaatccactgacccttgctgatcaaagaggtaacttcagtg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12601049 |
aacaataactgacgtaagaataaaagcacttaccttgaccgtgtttggcagaccaacaaaaatccactgacccttgctgatcaaagaggtaacttcagtg |
12600950 |
T |
|
| Q |
411 |
ccaagattcgtcacattaacacattgaccggtacggcaatcccatgtcctaagtgtaccatcagtgctgccagaataaagcttgtctgatccattgggaa |
510 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12600949 |
ccaagattcgtcacattaacacattgaccagtacggcaatcccatgtccgaagtgtaccatcagtgctgccagaataaagcttgtctgatccattgggaa |
12600850 |
T |
|
| Q |
511 |
ttgtcattccagtgataagctgttcaaaaacatttgaattaaacaacttcagaaatttcaacatagaaaggaagcatagtttcaaacatttcttaggaat |
610 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12600849 |
ttgttattccagtgataagctgttcaaaaatatttgaattaaacaacttcagaaatttcaacatagaacggaagcatagtttcaaacatttcttaggaat |
12600750 |
T |
|
| Q |
611 |
gtaaaatgggtggttattat |
630 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12600749 |
gtaaaatgggtggttattat |
12600730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 362 - 603
Target Start/End: Original strand, 11044555 - 11044794
Alignment:
| Q |
362 |
accaacaaaaatccactgacccttgctgatcaaagaggtaacttcagtgccaagattcgtcacattaacacattgaccggtacggcaatcccatgtccta |
461 |
Q |
| |
|
||||||||||||||| | |||| ||||||||| |||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||||| | |
|
|
| T |
11044555 |
accaacaaaaatccatgggccctcactgatcaaacaggtaacttcagcgcccagattcgtcacatcaacacattgaccagtacggcagtcccatgtccga |
11044654 |
T |
|
| Q |
462 |
agtgtaccatcagtgctgccagaataaagcttgtctgatccattgggaattgtcattccagtgataagctgttcaaaaacatttgaattaaacaacttca |
561 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
11044655 |
agtgtcccatccgtgctgccagaataaagtttgtctgatccatccggaattgtcattccagtgataagctgttcaaaaatattttaattaaactacttc- |
11044753 |
T |
|
| Q |
562 |
gaaatttcaacatagaaaggaagcatagtttcaaacatttct |
603 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
11044754 |
-aaatatcaacacagaaaggaagcctagtttcaaacatttct |
11044794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 166 - 540
Target Start/End: Complemental strand, 12599725 - 12599334
Alignment:
| Q |
166 |
agtgtatcatagccagcagtcattgcaaggactcgccccttaggtgcatcaagagtaaactgcgatgcagtcggaatatgccatgccttcacaaatacag |
265 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||||||||||||| | ||||||||||||| || || | |||||||||||| |||||||||||||||| |
|
|
| T |
12599725 |
agtgtatcattggcaacagtcatggcaaggactcgccccttagttccatcaagagtaaattgtgaagaagtcggaatatgaaatgccttcacaaatacca |
12599626 |
T |
|
| Q |
266 |
caatgacaaat-tcagcttataagac----------------aagatcacacaatgaaacaaaacaataactgacgtaagaataaaagcacttaccttga |
348 |
Q |
| |
|
|||||| ||| |||| ||| |||| |||||||||||||||| ||||||||| || | ||||| || || |||||||||| |
|
|
| T |
12599625 |
caatgaaaaaaatcagtttacaagaagtggtaaaaaattgataagatcacacaatgaaccaaaacaatgacaggaaaaagaagaagagttcttaccttga |
12599526 |
T |
|
| Q |
349 |
ccgtgtttggcagaccaacaaaaatccactgacccttgctgatcaaagaggtaacttcagtgccaagattcgtcacattaacacattgaccggtacggca |
448 |
Q |
| |
|
| ||||| | || ||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||| || |||| |
|
|
| T |
12599525 |
cagtgttcgtcaaaccaacaaaaatccatgggcccttgctgatcaaagaggtaatttcagcaccaagattcatcacattaacacagagaccagtttggca |
12599426 |
T |
|
| Q |
449 |
atcccatgtcctaagtgtaccatcagtgctgccagaataaagcttgtctgatccattgggaattgtcattccagtgataagctgttcaaaaa |
540 |
Q |
| |
|
|||||||| | |||||| ||||| | || ||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12599425 |
gtcccatgtgcgaagtgtcccatcgctacttccagaataaagtttgtctgatccatccggaattgtcattcgggtgataaactgttcaaaaa |
12599334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 11043815 - 11043886
Alignment:
| Q |
36 |
cctctccatgcagagattacaccgtcctgtgatttaattaatcaaatttaacataaactgatagataacagaaa |
109 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
11043815 |
cctctccatgcagaaattacaccatcctgtgatttaaataa--aaatttgacattaactgatagataacagaaa |
11043886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 12599884 - 12599814
Alignment:
| Q |
38 |
tctccatgcagagattacaccgtcctgtgatttaattaatcaaatttaacataaactgatagataacagaaa |
109 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||| | |||||||||||||| || | |||||||| ||||| |
|
|
| T |
12599884 |
tctccatgcagaaattataccatcctgtgatttaaat-atcaaatttaacattaatttatagataagagaaa |
12599814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University