View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19516_low_20 (Length: 274)

Name: NF19516_low_20
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19516_low_20
NF19516_low_20
[»] scaffold0218 (2 HSPs)
scaffold0218 (12-125)||(14378-14492)
scaffold0218 (189-266)||(14237-14314)
[»] scaffold0091 (3 HSPs)
scaffold0091 (12-125)||(29058-29172)
scaffold0091 (189-266)||(28917-28994)
scaffold0091 (204-266)||(24720-24782)
[»] chr3 (9 HSPs)
chr3 (12-123)||(16642300-16642412)
chr3 (12-124)||(4712800-4712913)
chr3 (12-125)||(14062778-14062892)
chr3 (12-125)||(14055037-14055151)
chr3 (22-122)||(13926858-13926960)
chr3 (202-266)||(16642133-16642197)
chr3 (202-266)||(4712995-4713059)
chr3 (202-266)||(14062981-14063045)
chr3 (203-266)||(14055221-14055284)
[»] chr6 (4 HSPs)
chr6 (12-125)||(14989375-14989489)
chr6 (12-124)||(14980263-14980376)
chr6 (202-266)||(14980458-14980522)
chr6 (89-125)||(10906902-10906938)
[»] chr1 (5 HSPs)
chr1 (12-125)||(51658662-51658776)
chr1 (19-125)||(13882243-13882350)
chr1 (202-266)||(13882462-13882526)
chr1 (205-263)||(51658854-51658912)
chr1 (18-111)||(1567069-1567166)
[»] chr7 (8 HSPs)
chr7 (12-125)||(48376788-48376902)
chr7 (12-125)||(16060513-16060627)
chr7 (189-266)||(16060374-16060449)
chr7 (22-125)||(4531759-4531864)
chr7 (203-266)||(9080206-9080269)
chr7 (214-266)||(16069015-16069067)
chr7 (214-266)||(48376637-48376689)
chr7 (89-125)||(9080339-9080375)
[»] chr8 (7 HSPs)
chr8 (12-125)||(23658527-23658649)
chr8 (12-69)||(23657827-23657884)
chr8 (215-266)||(23657648-23657699)
chr8 (71-125)||(23657752-23657807)
chr8 (215-266)||(23658423-23658474)
chr8 (214-266)||(17862251-17862303)
chr8 (22-57)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (12-103)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (52-125)||(130796-130870)
scaffold0003 (202-266)||(130633-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (12-80)||(13570-13638)
[»] scaffold0063 (2 HSPs)
scaffold0063 (189-266)||(28443-28518)
scaffold0063 (88-125)||(28342-28379)
[»] chr2 (2 HSPs)
chr2 (22-125)||(23656470-23656575)
chr2 (214-265)||(23907788-23907839)
[»] scaffold0061 (1 HSPs)
scaffold0061 (202-261)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (214-266)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (214-266)||(25756788-25756840)
chr5 (214-266)||(25790961-25791013)
chr5 (219-263)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (36-105)||(3576240-3576311)
chr4 (219-266)||(19728457-19728504)


Alignment Details
Target: scaffold0218 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||||||||    
T  14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 14314 - 14237
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 29172 - 29058
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||||||||    
T  29072 tgttagtgatgatga 29058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  204 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
Q  111 tgttagtgatgat 123  Q
    |||||||||||||    
T  16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
Q  111 tgttagtgatgatg 124  Q
    ||||||||||||||    
T  4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14062778 - 14062892
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
Q  111 tgttagtgatgatga 125  Q
    ||||||| |||||||    
T  14062878 tgttagttatgatga 14062892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14055037 - 14055151
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||| ||||    
T  14055137 tgttagtgataatga 14055151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  120 tga 122  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 16642197 - 16642133
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 4712995 - 4713059
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 14062981 - 14063045
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 14055221 - 14055284
Alignment:
Q  203 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 14989375 - 14989489
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||||||||    
T  14989475 tgttagtgatgatga 14989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
Q  111 tgttagtgatgatg 124  Q
    ||||||||||||||    
T  14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 14980458 - 14980522
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 10906902 - 10906938
Alignment:
Q  89 atgagaaatgataatgtttatatgttagtgatgatga 125  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatga 10906938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 51658662 - 51658776
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||||||||    
T  51658762 tgttagtgatgatga 51658776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 13882243 - 13882350
Alignment:
Q  19 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 117  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  118 gatgatga 125  Q
    ||||||||    
T  13882343 gatgatga 13882350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 13882462 - 13882526
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  205 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgat 263  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  18 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 111  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 48376902 - 48376788
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
Q  111 tgttagtgatgatga 125  Q
    ||||| |||||||||    
T  48376802 tgttattgatgatga 48376788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 16060627 - 16060513
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 110  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
Q  111 tgttagtgatgatga 125  Q
    |||||||||||||||    
T  16060527 tgttagtgatgatga 16060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 4531759 - 4531864
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  120 tgatga 125  Q
    ||||||    
T  4531859 tgatga 4531864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 9080269 - 9080206
Alignment:
Q  203 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 16069015 - 16069067
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 9080375 - 9080339
Alignment:
Q  89 atgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatga 9080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 23658649 - 23658527
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgataa 102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| ||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
Q  103 tgtttatatgttagtgatgatga 125  Q
    |||||||||||||||||||||||    
T  23658549 tgtttatatgttagtgatgatga 23658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 23657884 - 23657827
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatata 69  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatata 23657827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  215 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 23657807 - 23657752
Alignment:
Q  71 atgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  23657807 atgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatga 23657752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  215 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 17862251 - 17862303
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga 57  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 93 - 1
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 103  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 130870 - 130796
Alignment:
Q  52 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 130796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 130697 - 130633
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 13570 - 13638
Alignment:
Q  12 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 80  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  189 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 28342 - 28379
Alignment:
Q  88 gatgagaaatgataatgtttatatgttagtgatgatga 125  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatga 28379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 23656470 - 23656575
Alignment:
Q  22 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 119  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  120 tgatga 125  Q
    | ||||    
T  23656570 taatga 23656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 23907839 - 23907788
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgt 265  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  202 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatg 261  Q
    ||||||| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 1432 - 1484
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 25756788 - 25756840
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 25791013 - 25790961
Alignment:
Q  214 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  219 atgagaatgaagacgtataattatgatgatgacttgaatgatgat 263  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  36 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 105  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 19728457 - 19728504
Alignment:
Q  219 atgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 266  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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