View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19516_low_21 (Length: 269)

Name: NF19516_low_21
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19516_low_21
NF19516_low_21
[»] chr1 (2 HSPs)
chr1 (17-266)||(6356826-6357075)
chr1 (176-225)||(50391935-50391983)
[»] chr4 (2 HSPs)
chr4 (173-225)||(22681171-22681222)
chr4 (181-224)||(11307624-11307666)
[»] chr8 (1 HSPs)
chr8 (173-225)||(19263310-19263361)
[»] chr3 (2 HSPs)
chr3 (173-225)||(50432-50483)
chr3 (175-223)||(51677364-51677411)
[»] scaffold0548 (1 HSPs)
scaffold0548 (181-224)||(4113-4155)
[»] scaffold1743 (1 HSPs)
scaffold1743 (173-225)||(194-245)
[»] chr5 (1 HSPs)
chr5 (176-224)||(28296072-28296119)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 6357075 - 6356826
Alignment:
Q  17 ataaagatcgtagagagacaaacaccaagattgtttaccactctctgattcacaatcaacgagtctttacaaagatacaaaagagtttaaaaaattaatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6357075 ataaagatcgtagagagacaaacaccaagattgtttaccactctctgattcacaatcaacgagtctttacaaagatacaaaagagtttaaaaaattaatg 6356976  T
Q  117 ttcgacatgaacaaaccctaattcctacctttttctcttattaaaatatataaacaatatgactcatatacctcatgtcttaaaggttttgggtggagat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6356975 ttcgacatgaacaaaccctaattcctacctttttctcttattaaaatatataaacaatatgactcatatacctcatgtcttaaaggttttgggtggagat 6356876  T
Q  217 gtggtgtcaccatctcgtggtcatggaatatttggaccctttgcttctcc 266  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6356875 gtggtgtcaccatctcgtggtcatggaatatttggacccgttgtttctcc 6356826  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 50391983 - 50391935
Alignment:
Q  176 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 225  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  50391983 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 50391935  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 22681222 - 22681171
Alignment:
Q  173 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 225  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  22681222 atatgactcatatacctaatgtcttaa-ggtttagggtggagatgtggtgtca 22681171  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 11307666 - 11307624
Alignment:
Q  181 catatacctcatgtcttaaaggttttgggtggagatgtggtgtc 224  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  11307666 catatacctcatgtcttaatg-ttttgggtggagatgtggtgtc 11307624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 19263361 - 19263310
Alignment:
Q  173 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 225  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||||||||    
T  19263361 atatgactcatatacctaatgtctt-aaggtttaggatggagatgtggtgtca 19263310  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 50432 - 50483
Alignment:
Q  173 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 225  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||||||||    
T  50432 atatgactcatatacctaatgtctt-aaggtttgggatggagatgtggtgtca 50483  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 51677364 - 51677411
Alignment:
Q  175 atgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgt 223  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||    
T  51677364 atgactcatatacctaatgtcttggag-ttttgggtggagatgtggtgt 51677411  T

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Target: scaffold0548 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 4155 - 4113
Alignment:
Q  181 catatacctcatgtcttaaaggttttgggtggagatgtggtgtc 224  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  4155 catatacctcatgtcttaatg-ttttgggtggagatgtggtgtc 4113  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 245 - 194
Alignment:
Q  173 atatgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 225  Q
    |||||||||||||| || ||||||||| ||||| || ||||||||||||||||    
T  245 atatgactcatatatctaatgtcttaa-ggtttaggatggagatgtggtgtca 194  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 28296119 - 28296072
Alignment:
Q  176 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtc 224  Q
    |||| ||||||||| || |||||| ||||||||||||||||||||||||    
T  28296119 tgacccatatacctaatctcttaa-ggttttgggtggagatgtggtgtc 28296072  T

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