View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_24 (Length: 227)
Name: NF19516_low_24
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_24 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 2673324 - 2673544
Alignment:
| Q |
7 |
caaagatcttacctgtgtaattaatttgaagaaaattgttaaaataaagaatttaatggggatgcacattattaatgtaaaatagttatatgtcatgatt |
106 |
Q |
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| T |
2673324 |
caaagatcttacctgtgtaattaatttgaagaaaattgttaaaaaaaataatttaatggggatgcacactattaatgtaaaatagttatatgtcgtgttt |
2673423 |
T |
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| Q |
107 |
aagctagaactcgcgatattatcatgtaagctcacttggtcatcacaatttaaaaataaccgtaaaatgtttaattctcattaggcgtcggtctataatt |
206 |
Q |
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| T |
2673424 |
aagctagaactcgcgatattatcatgtaagctcacttggtcatcacaatttaaaaataaccgtaaaatgtttaattctcattagacgtcggtctataatt |
2673523 |
T |
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| Q |
207 |
agtttacaccgacaatgcgtt |
227 |
Q |
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| T |
2673524 |
agtttacaccgacaatgcgtt |
2673544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 2591001 - 2590934
Alignment:
| Q |
156 |
ttaaaaataaccgtaaaatgtttaattctcattaggcgtcggtctataattagtttacaccgacaatgc |
224 |
Q |
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| T |
2591001 |
ttaaaaataaccgcaaattgtttaattcttattagacgtcggtatat-attagtttacactgaaaatgc |
2590934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 2591287 - 2591249
Alignment:
| Q |
55 |
gaatttaatggggatgcacattattaatgtaaaatagtt |
93 |
Q |
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| T |
2591287 |
gaatttaatagagatgcacattattaatgtaaaatagtt |
2591249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 2622594 - 2622527
Alignment:
| Q |
156 |
ttaaaaataaccgtaaaatgtttaattctcattaggcgtcggtctataattagtttacaccgacaatgc |
224 |
Q |
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| T |
2622594 |
ttaaaaataaccataaattgtttaattcttattagacgtccatatataa-tagtttacactgacaatgc |
2622527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 26988914 - 26988846
Alignment:
| Q |
114 |
aactcgcgatattatcatgtaagctcacttggtcatcacaatttaaaaataaccgtaaaatgtttaatt |
182 |
Q |
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| T |
26988914 |
aactcacgacattgtcatgtaagctcacattgtcacgacaatttgagaataaccgtaaaatgttgaatt |
26988846 |
T |
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