View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_25 (Length: 226)
Name: NF19516_low_25
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_25 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2673757 - 2673542
Alignment:
| Q |
1 |
tgacccattcaattggcactaaaattacaaatttctaagaaatgatcttaccttttggattatcatttcatattaacttcgttctatttactagcttcca |
100 |
Q |
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| T |
2673757 |
tgacccattcaattggcactaaaattacaaatttctaagaaatgatcttaccttttggattatcatttcatattaacttcgttctatttactagcttcca |
2673658 |
T |
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| Q |
101 |
agaatctttcaataacatggttcnnnnnnnnnnnnnnnnattcagtcactgattgttactgttcttcattttgaggaatgtatagtgacaaatgatctta |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2673657 |
agaatctttcaataacatggtt----------tttattttttcagtcattgattgttactgttcttcattttgaggaatgtatagtgacaaatgatctta |
2673568 |
T |
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| Q |
201 |
ttattattttttagaaaagatgaaac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2673567 |
ttattattttttagaaaagatgaaac |
2673542 |
T |
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