View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_4 (Length: 618)
Name: NF19516_low_4
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 7580962 - 7581291
Alignment:
| Q |
9 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacata |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7580962 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgatattcttcaaacaatgaaaaacata |
7581061 |
T |
|
| Q |
109 |
attgcttgatgctgctaatttcatttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcattttatatcttggatccaaaacaat |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7581062 |
attgcttgatgctgctaatttcatttgaagatgcacttccttaaagcaaaggataaaagtattctaataacttcattttatatcttggatccaaaacaat |
7581161 |
T |
|
| Q |
209 |
ggcaattcccataattccatgaataacagaccaatatttgtcaaacttaacaatcatttttgaagccatatttctaataatagattcaattgagcaagtc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7581162 |
ggcaattcccataattccatgaataacagaccaatatttgtcaaacttaacaatcatttttgaagccatatttc---taatagattcaattgagcaagtc |
7581258 |
T |
|
| Q |
309 |
acccgcttcttcaaagatagttttatttcacaa |
341 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
7581259 |
acccacttcttcaaagatagttttatttcacaa |
7581291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 348 - 602
Target Start/End: Original strand, 7581373 - 7581627
Alignment:
| Q |
348 |
gaacaaatttcttttgcagtttcccactcacctgttgttggcaaagatgtatacaagtgatcttttgttcttaaacgaataaaaacatctttataagaca |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7581373 |
gaacaaatttcttttgcagtttcccactcacctgttgtaggcaaagatgtatacaagtgatcttttgttcttaaacgaataaaaacatctttataagcca |
7581472 |
T |
|
| Q |
448 |
atgcaacaataaacatgtgataagtagaattccatctggttttgcaatcaagaatgagtttctttgtgattgtaacttttatttggcgtgctgcttctct |
547 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7581473 |
atgcaacaataagcatgtgataagtagaattccatcttgttttgcaatcaagaatgagtttctttgtgattgtaacttttatttggcgtgctgcttctct |
7581572 |
T |
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| Q |
548 |
aaaactttgttctctcttaggtgtggctgtccaaaaagccacactattcctaact |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7581573 |
aaaactttgttctctcttaggtgtggctgtccaaaaagccacactattcctaact |
7581627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 4901144 - 4900815
Alignment:
| Q |
9 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
4901144 |
acatcatcaatatttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgatattcttcaaacaatgaaaaacata |
4901045 |
T |
|
| Q |
109 |
attgcttgatgctgctaatttcatttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcattttatatcttggatccaaaacaat |
208 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4901044 |
attgcttgatgctgctaatttcatttgaagatgcacttccgtaaagcaaaggataaaagtattctaataacttcattttatatcttggatccaaaacaat |
4900945 |
T |
|
| Q |
209 |
ggcaattcccataattccatgaataacagaccaatatttgtcaaacttaacaatcatttttgaagccatatttctaataatagattcaattgagcaagtc |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4900944 |
ggcaattcccataattccatgaattacagaccaacatttttcaaacttaacaatcatttttgaagccatatttct---aatagattcaattgagcaagtc |
4900848 |
T |
|
| Q |
309 |
acccgcttcttcaaagatagttttatttcacaa |
341 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
4900847 |
acccacttcttcaaagatagttttatttcacaa |
4900815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 348 - 602
Target Start/End: Complemental strand, 4900733 - 4900479
Alignment:
| Q |
348 |
gaacaaatttcttttgcagtttcccactcacctgttgttggcaaagatgtatacaagtgatcttttgttcttaaacgaataaaaacatctttataagaca |
447 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4900733 |
gaacaaatttcttttgcagtttcccactcacctgttgcaggcaaagatgtatacaagtgatcttttgttcttaaacgaataaaaacatctttataagcca |
4900634 |
T |
|
| Q |
448 |
atgcaacaataaacatgtgataagtagaattccatctggttttgcaatcaagaatgagtttctttgtgattgtaacttttatttggcgtgctgcttctct |
547 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900633 |
atgcaacaataagcatgtgataagtagaattccatctggttttgcaatcaagaatgagtttctttgtgattgtaacttttatttggcgtgctgcttctct |
4900534 |
T |
|
| Q |
548 |
aaaactttgttctctcttaggtgtggctgtccaaaaagccacactattcctaact |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900533 |
aaaactttgttctctcttaggtgtggctgtccaaaaagccacactattcctaact |
4900479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 350 - 601
Target Start/End: Complemental strand, 20673686 - 20673432
Alignment:
| Q |
350 |
acaaatttcttttgcagtttcccactcacctgttgttggcaaagatgtatacaagtgatcttttgttctt---aaacgaataaaaacatctttataagac |
446 |
Q |
| |
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||||||||||||||||||||||||||||| ||| || |||||||||||||| || || ||| || || || ||||||||||||||||||||||||| | |
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| T |
20673686 |
acaaatttcttttgcagtttcccactcacttgtagtaggcaaagatgtatagaaatgctctcttcttgttttcaaacgaataaaaacatctttataagtc |
20673587 |
T |
|
| Q |
447 |
aatgcaacaataaacatgtgataagtagaattccatctggttttgcaatcaagaatgagtttctttgtgattgtaacttttatttggcgtgctgcttctc |
546 |
Q |
| |
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|||||||||| || |||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||| |||||||||||| ||| |||||||| |
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| T |
20673586 |
aatgcaacaacaagcatgtgataagtagaatttcatctagttttgcaatcaagaataagtttctttgagattgaaacttttatttgatgtgttgcttctc |
20673487 |
T |
|
| Q |
547 |
taaaactttgttctctcttaggtgtggctgtccaaaaagccacactattcctaac |
601 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20673486 |
taaaagtttgttctctcttaggtgtggctgtccaaaaagccactttattcctaac |
20673432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 20674090 - 20673770
Alignment:
| Q |
20 |
atttgaatcattgtcattggacttttcagttgaaccttcaaccatttcattgattttagcttgacactcttcaaacaatgaaaaacataattgcttgatg |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| ||||||| ||||| |||||||||| | |||||||||| ||| || | ||| ||||||||| |
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| T |
20674090 |
atttgaatcattatcattggacttttcagttgatcctccaaccatcccattggttttagcttggtattcttcaaacactgagaagcttaactgcttgatg |
20673991 |
T |
|
| Q |
120 |
ctgctaatttca--tttaaagatgcacttccataaagcaaaggataaaagtattctaataacttcattttatatcttggatccaaaacaatggcaattcc |
217 |
Q |
| |
|
||||||||||| | | |||| ||| |||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||| | || ||||||| |
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|
| T |
20673990 |
ttgctaatttcaactctgaagacatactcccataaagaaaaggaaagaagtactctaataacttcattttgtatcttggatccaaaagactgacaattcc |
20673891 |
T |
|
| Q |
218 |
cataattccatgaataacagaccaatatttgtcaaacttaacaatcatttttgaagccatatttctaataatagattcaattgagcaagtcacccgcttc |
317 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||| ||| || | |
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| T |
20673890 |
catgattccatgaataactaaccaatatttgtcaaacttaagaatcattcttgaagccatatttct---aatagcttcaattgagcaagtctcccactgc |
20673794 |
T |
|
| Q |
318 |
ttcaaagatagttttatttcacaa |
341 |
Q |
| |
|
|| | |||||| |||||||||||| |
|
|
| T |
20673793 |
tttagagatagctttatttcacaa |
20673770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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