View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19516_low_5 (Length: 590)
Name: NF19516_low_5
Description: NF19516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19516_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 207 - 581
Target Start/End: Complemental strand, 7948745 - 7948370
Alignment:
| Q |
207 |
atataagacgtgttcggtgttcaacatcaacacatataaatcatgatacattcaatgatttcatatttaaattttttaacagcg-catgttaatgtcgtc |
305 |
Q |
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| T |
7948745 |
atataagacgtgttcaatgttcaatatcaacacatataaatcatgatacattcaatgatttcatatttaaattttttaacagcgacgtgttaatgtcgtc |
7948646 |
T |
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| Q |
306 |
tttgatgtatgatgttaacatttcatattagatgagtcctaatcgggactcaatttcacaaataccaatcactatttagttactggttgattgaacatga |
405 |
Q |
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| T |
7948645 |
ttcgatgtatgatgttaacatttcatattagatgagtcataatggagactcaatttcacaaataccaatcactatttaattactgcttgattgaacatga |
7948546 |
T |
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| Q |
406 |
ttgcattcagagattttcaaattcagtactttatgcatcatcatttttctccaaaaataaacatacaaataatttaagggaaaaaagcacctcaaccatg |
505 |
Q |
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| T |
7948545 |
ttgtattcacagattttcaaatttagtactttatgcatcatcatttttctccaaaaataaacatacaaataatttaagggaaaaaagcacctcaaccatg |
7948446 |
T |
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| Q |
506 |
aaagacacatctcaacctctctcccacaaccaaggcatgaaaggcggagaataactctgacatgacatgatgatgt |
581 |
Q |
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| T |
7948445 |
aaagacacatctcaacctctctcccacaaccaaggcatgaaaggcggagaataactctgacatgacatgatgatgt |
7948370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 7948956 - 7948801
Alignment:
| Q |
9 |
tcaaaatgatttaggg-tcaatgttacatttctatagacatgaatatttcggtcacttggattttatcacatctctatgtattttggtgttttatgcaat |
107 |
Q |
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| T |
7948956 |
tcaaaatgattcaggggtcaatgttacatttctatagacataaatatttcggtcacttggattttatcacatctctatgtattttggtgttttatgcaat |
7948857 |
T |
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| Q |
108 |
taacttggaggtaatgagtttattttcgatgtactatatcgatttgaatgaatata |
163 |
Q |
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| T |
7948856 |
taacttggaggtaatgtgtttattttcgatgtactatatcgatttgaatgaatata |
7948801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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