View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19517_high_1 (Length: 338)

Name: NF19517_high_1
Description: NF19517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19517_high_1
NF19517_high_1
[»] chr5 (1 HSPs)
chr5 (24-320)||(7266635-7266931)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 320
Target Start/End: Complemental strand, 7266931 - 7266635
Alignment:
Q  24 ctctcaaactcattcccatacttaaaattccaaatctaccccttcaacactgaaaccatttcaggtctaatctcaacctcaatacgctctgcactcgata 123  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266931 ctcttaaactcattcccatacttaaaattccaaatctaccccttcaacactgaaaccatttcaggtctaatctcaacctcaatacgctctgcactcgata 7266832  T
Q  124 cacctctcaactacgcgcgaaattacctctctaatcttcttccaaactgcgttcacaaaatcgtttaccttgattctgatctcattcttgtcgatgatat 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266831 cacctctcaactacgcgcgaaattacctctctaaccttcttccaaactgtgttcacaaaatcgtttaccttgattctgatctcattcttgtcgatgatat 7266732  T
Q  224 cgcaaaactcgctgcaacgaatctcacaaacgaagccgttttagctgcacctgaatactgcaacgcgaatttcagttactattttacccctacgttt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7266731 cgcaaaactcgctgcaacgaatctcacaaacgaagccgttttagctgcacctgaatactgcaacgcgaatttcagttactattttacccctacgttt 7266635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University